Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0846 ATGGAACAATCGAAGCCGGAAACACCGGCAACTACAACAGAGACAGTTCCGGCGACAGTTCCGGCGACCGTTACGGTGACTGCGGCGGAGACGAATCAAGTTGAAGTTCCGACGAAGGCAGTTTCCGATGTGAACATGACGGAGAGAGACGGCGGTTGTTGTACTGCGCCGAAAGTAGTTCTCGCTGTCATCGCCGAGAACAGTGAAGTTATGAAGAAGAAGCGTGGTCGTCCGGCGAAAGGAACTCCGAAAGTAGCTCCTCCGCCGAAGCAGATCAAGAAGGAAGATGAAGATGTTTGCTTCATTTGCTTCGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGTTGTCCTAAAGCGTATCATCCGGCATGTGTTAAGCGAGATGAAGCGTTCTTCCGTTCAAAAGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAGCATCCCATTATATGTGCTATACATGTACGTATTCTTTGTGCAAGGGGTGTATAAAAAATGCGGATTTTGTTTCTGTTAGAGGAAATAAAGGTTTGTGTGGAATTTGCAAGAAAACTATAATGCTGATTGAGAATAGTGCCCATGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGACATTATTGAAAGAGAATCTATCTTTAACGTTTGATGAGCTCCTTCAAGCTAAAAACCCATTGAGCGCTGCTGCTCCTATGGTTCAAACTTCCCACAAACTTTACCATCTTAAAAATGAAAAAGGTTCTGGTTTTGAGAACTCCTGTGTAGATATAGAATCAAATAATTTGAAAAACAAGAAGCCTAAGGGACCTTCAGGCGGTGACACGGGTATGTCTTTGCCTGAGTGCAAGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCACATATGAAAAATGGTGATACGTCTATACTTTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTAAAGAAAAACAATCTGCGTGACCCTCAACAGAAATCTCTAATTGTTTGCGACTCTAGACTAGTAAATTTGTTTGGAAAAGCTCGTCTTGGTTACATTGAAATGCTAATGCTCCTTGAACCCCACTTTCTTATAAAAGAAAATACCCCTGCAGAAAATAATTTTGGCGCAGGAATTAGTGATGCTGTTGCAAATGGAAAGGAGGCCATTGACAGTAACAATAGACAGTCAGTATTAGTCAATGATAAGAGATGCACAAGTAAAAAGGCTGACATGCCTGTGCCACAAAATAATCAAGATGCATACGCATCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACTGATGATAGTGAAAGTATTCACGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCTTACAAAATTGGCACAAGAACGACTGACATTAAGCTTGAAATTTTAAATTTAAACCGGAAGGAGGTCATATCGATAGACGAGATTTCGAATCAGGAGTTCTCCGAGGATGAATGCAAGCGATTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATTCTGAACAAAGCGCTGACATTTCAAGAAATTAGAGTCAATGATTTATTGGAAGCTGAGAAATTGCGGCTTAATAATCTTCGGGATAGAGCAAGCGAGAAGGGACACAGAAAAGAGCTTAAAGAATGCGTGGAGAAGTTGCAGCTACTAAATTCCCCAGTGGAACGTCAGCGCAGACTGCATGAAGTTCCAGATGTACACTCTGACCCCAATTTGGATTCATTGTATGAGTCTGATGAAGATGCTGGAGAGTCAGATGGCAATCAACAAGATGGCAATATACCTATTTTCTCCAGAATTTGGGATGGTGTCTTGAATGGTATTGGGGGAAGAACACGGGACTTGACCACTGCCAGTGACCCAATTGAGAATACATGCTTACTAAAGAAGCATATCAACCCAAACGAAACTCCTATTGATGATAGTGCTGATGTTGTTACGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCTTCTCCACTTATCTCTACAGGGAGTGCGCAGCCATTTGATGATTTTATGAATGATAGATCATGGCATTATCAGGATCCATCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAGTGGACATTTCCCTCCAGATCTCAAAGTATGGAGGGTAGATGAGAAACAAGCAAACTCTATATTGTTAACTGATGCACTTAATGGGAAGTGCTCCAAAAATGTGCCATTGCGGAACAACAGCCTATTGCTCTCTTTAGGAGCCAATGTTGCATTGGATGACAAAGAAAGCAGTCAGGATGGTGGGAGGAATTCAACAACGAATGAAATTTCTGCAGATAGCCGAATCATAGAACAGATCAGAGAACAAAAAGTGGATGATATTTCGACCCAGTCTAATGGTAAAGATGAATCCGTTAGGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTCTATACAACCAACTGCCTTTTCTGAGAATTTGAATGAGAATCACACCAACAAATTAAGGGAGGATCATGGGATTGAAAAAAACTCTGAAGATAATGGAAATCATGACTCAAACAGGACTTCTGGTGGTCAGAGTAATAGTGGTCAGAATCATCAGAAGCAATCAGATAGTGAAGACAACTCAGGGCAATCTTCGGCACAAAGCTGGAGAAACCATAATGTAAATACTTCTTCCAATTGCTTGGATACCACATCGGCTCATGTTTCTGAGACAAGAACATCACCACTTAAGCTGGGATTTGATTTGCACCAACCCCCTTCCCATCCAGCATGCAATGCAACTACATGGCAGGCTATTATAGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAAGTGGAGGCAATGGAATCGCTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGTGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTGCAGAGCTTAGTCCAATGCTTGATGCAGGTAAAAGCGATGCATTGAGCTCGACATGTGATTTACAGTTACTATCTCAATCTACAGCAGCAGAGGAACCGTTACAACAAGCAGATGTCAATCATCATCATCAAAGAATATCAGAGGAGCTTTCCTCGAGAAATTCTAAAGTTGACGTGGGTTCAAAGAACATATGTGTTTCAACTAACCAGTGGGAGTCAGGCTCCGAAAATTCTTCTATTTTTCCAGCCACTGCAACATTGGGCATGACTGTAGACACCACTTGGAGACTTGGATTGGAAAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACACGAGTTGGGGAGTAGGAAATACGGCAGTGAATGAGAACAGAAGCTCAAATTCATGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAAACAAGATACGGAAGTGATCGATTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCAGGTTTAGTTAGAGGCAGAGCTGCGTGGAACAGGCAACCACTATTTGGTGTTGGTAATGGAATCTCGTATAGACCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAGGAAAGGGGCATCCTGTGAATACTTCCACCCATGA 3798 0.4252 MEQSKPETPATTTETVPATVPATVTVTAAETNQVEVPTKAVSDVNMTERDGGCCTAPKVVLAVIAENSEVMKKKRGRPAKGTPKVAPPPKQIKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCIKNADFVSVRGNKGLCGICKKTIMLIENSAHGNKEMCEVDFDDKSSWEYLFKVYWTLLKENLSLTFDELLQAKNPLSAAAPMVQTSHKLYHLKNEKGSGFENSCVDIESNNLKNKKPKGPSGGDTGMSLPECKRWASKELLEFVSHMKNGDTSILSQFDVQNLLLEYVKKNNLRDPQQKSLIVCDSRLVNLFGKARLGYIEMLMLLEPHFLIKENTPAENNFGAGISDAVANGKEAIDSNNRQSVLVNDKRCTSKKADMPVPQNNQDAYASINAHNINLIYLRRSLMESLTDDSESIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLEAEKLRLNNLRDRASEKGHRKELKECVEKLQLLNSPVERQRRLHEVPDVHSDPNLDSLYESDEDAGESDGNQQDGNIPIFSRIWDGVLNGIGGRTRDLTTASDPIENTCLLKKHINPNETPIDDSADVVTKSEVSSVAVDISSPLISTGSAQPFDDFMNDRSWHYQDPSGKVQGPFSMLQLYKWNASGHFPPDLKVWRVDEKQANSILLTDALNGKCSKNVPLRNNSLLLSLGANVALDDKESSQDGGRNSTTNEISADSRIIEQIREQKVDDISTQSNGKDESVRSNGWHDQSHVHPSIQPTAFSENLNENHTNKLREDHGIEKNSEDNGNHDSNRTSGGQSNSGQNHQKQSDSEDNSGQSSAQSWRNHNVNTSSNCLDTTSAHVSETRTSPLKLGFDLHQPPSHPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFAELSPMLDAGKSDALSSTCDLQLLSQSTAAEEPLQQADVNHHHQRISEELSSRNSKVDVGSKNICVSTNQWESGSENSSIFPATATLGMTVDTTWRLGLESTHLEWGGMDQRNANTSWGVGNTAVNENRSSNSCTSVVTPSFGDSQTRYGSDRFSVPRDRGFPGHGREPGLVRGRAAWNRQPLFGVGNGISYRPLPKGQRVCKFYESGYCRKGASCEYFHP* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0846 1265 CDD PHD5_NSD 99 144 - -
Mtr5g0846 1265 Gene3D - 440 569 IPR036128 GO:0003677
Mtr5g0846 1265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 205 IPR013083 -
Mtr5g0846 1265 SUPERFAMILY Plus3-like 441 569 IPR036128 GO:0003677
Mtr5g0846 1265 ProSitePatterns Zinc finger PHD-type signature. 100 160 IPR019786 -
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 816 882 - -
Mtr5g0846 1265 CDD SWIB-MDM2_like 302 378 - -
Mtr5g0846 1265 ProSiteProfiles Zinc finger C3H1-type profile. 1240 1265 IPR000571 GO:0046872
Mtr5g0846 1265 SUPERFAMILY GYF domain 734 789 IPR035445 -
Mtr5g0846 1265 SMART swib_2 301 383 IPR019835 -
Mtr5g0846 1265 Gene3D - 738 794 IPR035445 -
Mtr5g0846 1265 SMART PHD_3 99 145 IPR001965 -
Mtr5g0846 1265 Gene3D SWIB/MDM2 domain 295 387 IPR036885 -
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 1 21 - -
Mtr5g0846 1265 SUPERFAMILY FYVE/PHD zinc finger 94 144 IPR011011 -
Mtr5g0846 1265 Pfam GYF domain 739 782 IPR003169 GO:0005515
Mtr5g0846 1265 SMART gyf_5 737 792 IPR003169 GO:0005515
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 867 882 - -
Mtr5g0846 1265 CDD GYF 736 791 IPR003169 GO:0005515
Mtr5g0846 1265 ProSiteProfiles GYF domain profile. 736 790 IPR003169 GO:0005515
Mtr5g0846 1265 ProSiteProfiles SWIB/MDM2 domain profile. 297 380 IPR003121 -
Mtr5g0846 1265 SUPERFAMILY SWIB/MDM2 domain 302 379 IPR036885 -
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 898 962 - -
Mtr5g0846 1265 ProSiteProfiles Zinc finger PHD-type profile. 97 163 IPR019787 -
Mtr5g0846 1265 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 977 1265 - -
Mtr5g0846 1265 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 3 971 - -
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 837 866 - -
Mtr5g0846 1265 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 977 1265 - -
Mtr5g0846 1265 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 3 971 - -
Mtr5g0846 1265 Coils Coil 573 593 - -
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 617 653 - -
Mtr5g0846 1265 Pfam Plus-3 domain 444 547 IPR004343 GO:0003677
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 617 633 - -
Mtr5g0846 1265 ProSiteProfiles Plus3 domain profile. 439 572 IPR004343 GO:0003677
Mtr5g0846 1265 Pfam SWIB/MDM2 domain 305 378 IPR003121 -
Mtr5g0846 1265 SUPERFAMILY CCCH zinc finger 1240 1264 IPR036855 GO:0046872
Mtr5g0846 1265 MobiDBLite consensus disorder prediction 909 962 - -
Mtr5g0846 1265 SMART rtf1 439 549 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0846 Mtr-Chr5 8324398 8331237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0846 96 168 PHD Transcription Factor Family AT5G36670 36.000 7.93e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Mtr5g0846 Plus-3 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0846 - - aprc:113869503 1899.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0846 5 8324398 8331237 Mtr5g0846 5 8324398 8331237 ECH