Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0840 ATGCTTTACCAAACTTCCTATCCTCTTCTCTTTCAATTTCATCCTCTGCATTCTTCTTCCACCACCATTCCTCTCTCAACCATATCACCACAAAAACTTTCTCTCTTTTCTCATCTTCCTCATCCTCACTCACAGGTTTCAAAAACGGTAATGGAGTGCGTTGTTGAAACAGCGTTGAAAACCAGTTTAAGGAAAGACATAACTCCTCAAACATTTGTTGATGAAATTTCAGCACTCAATGCTCAAAATGGAACAACTTCTGATGATTTTTTCGTTGACGACCTCCTTGACTTTTCTCACGTTGAAGAACAACAACAACAACAAGAACAAGAGGAACAACACCAACAACAGCAAGAACACTCTCTTTGTCTCTCCCTCAAACAAAACCATGAAACTTCAAACCCTAACACCACTTTCTCTCTCAAAGAAGATTATTCTTCTCTACCCACCAACGACCTTAATGTTCCGAGTGACGATGTAGCGGATTTGGAATGGCTTTCGCATTTCGTTGAAGATTCTGATTCCTTCTCTGGAATGGCTTTAACAACAACAACGGAGAAAAACCCTAAAAGCTTTGTTGTGTTTGAAGAGCCTAAGCCGAAACAAGAAAACTCAGTTTTTACTACTTTCAAAACACCGGTTCAGACCAAAGCTAGGAGCAAAAGAGCCAGAACCGGTGTTAGGGTTTGGCCATTCGGGTCAACCGATTCTTCTTCAAGCTCAACCACCACCACAACTTCATCTTCAACCTCTTCATCTCCAACCAGTCCCTTGATGATTTACACCAACATGCTTCAAGTTCAAAGTTTTGACTCGGTTAAGGTAAAGAAACCGAAGAAAATAGCTTCTTCTAACGGGTCGGGTCATGTTGGTGCGGTGGTTATGGCGGCGCCGCCGCGACGATGCAGTCATTGTGGTGTAACAAAGACTCCACAGTGGAGAAGTGGACCCCTTGGAGCAAAAACACTTTGCAATGCATGTGGGGTCCGTTTCAAATCGGGTCGGTTACTGCCAGAATATCGACCCGCTTGTAGCCCTACATTTTCAAGCGAATTGCACTCAAACCACCACCGGAAAGTTCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGGTGGTGTTGAAATTGAAGTTGAAACTGGTTTGTCCCGTTCTCCGGTTGTTCCTAGTTTTTGA 1173 0.4348 MLYQTSYPLLFQFHPLHSSSTTIPLSTISPQKLSLFSHLPHPHSQVSKTVMECVVETALKTSLRKDITPQTFVDEISALNAQNGTTSDDFFVDDLLDFSHVEEQQQQQEQEEQHQQQQEHSLCLSLKQNHETSNPNTTFSLKEDYSSLPTNDLNVPSDDVADLEWLSHFVEDSDSFSGMALTTTTEKNPKSFVVFEEPKPKQENSVFTTFKTPVQTKARSKRARTGVRVWPFGSTDSSSSSTTTTTSSSTSSSPTSPLMIYTNMLQVQSFDSVKVKKPKKIASSNGSGHVGAVVMAAPPRRCSHCGVTKTPQWRSGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVGGVEIEVETGLSRSPVVPSF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0840 390 Pfam GATA zinc finger 302 336 IPR000679 GO:0006355|GO:0043565
Mtr5g0840 390 Gene3D - 295 369 IPR013088 GO:0006355|GO:0008270
Mtr5g0840 390 ProSiteProfiles GATA-type zinc finger domain profile. 296 332 IPR000679 GO:0006355|GO:0043565
Mtr5g0840 390 SMART GATA_3 296 350 IPR000679 GO:0006355|GO:0043565
Mtr5g0840 390 CDD ZnF_GATA 301 349 IPR000679 GO:0006355|GO:0043565
Mtr5g0840 390 Coils Coil 100 121 - -
Mtr5g0840 390 MobiDBLite consensus disorder prediction 217 257 - -
Mtr5g0840 390 PANTHER GATA TRANSCRIPTION FACTOR 51 370 - -
Mtr5g0840 390 MobiDBLite consensus disorder prediction 231 257 - -
Mtr5g0840 390 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 298 358 - -
Mtr5g0840 390 ProSitePatterns GATA-type zinc finger domain. 302 327 IPR000679 GO:0006355|GO:0043565
Mtr5g0840 390 MobiDBLite consensus disorder prediction 102 121 - -
Mtr5g0840 390 MobiDBLite consensus disorder prediction 102 116 - -
Mtr5g0840 390 PANTHER GATA TRANSCRIPTION FACTOR 51 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0840 Mtr-Chr5 8256069 8257794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0840 56 390 C2C2-Gata Transcription Factor Family AT5G66320 45.058 5.16e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr5g0840 GATA 3.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0840 - - var:108335072 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0840 5 8256069 8257794 Mtr8g2437 8 34803273 34804790 ECH
Mtr5g0840 5 8256069 8257794 Mtr5g0840 5 8256069 8257794 ECH
Mtr5g0840 5 8256069 8257794 Mtr8g2437 8 34803273 34804790 PCT