Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0838 ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAATCCTACTAACAGGCAAGTGACATACTCAAAGAGAAGGAATGGTATATTCAAGAAAGCACATGAACTTAGTGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCCAAAAATAACAAGATGCATGAATACATCACCCCTGGTCTCTCTACAAAGAAGATTATTGATCAGTATCAGAAGACTTTAGGGGATATAGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACCATAAGCTTAGAAGACAGATCAGGCATAGAATAGGTGAGGGTGGTATGGAATTGGATGACCTTAGCTTCCAGCAACTGCGTAGTCTTGAAGAGGATATGAATTCTTCCATTGCAAAAATACGTGAAAGGAAGTTTCATGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCTTGCTTGAACTTAAGGAAAAATGTGTGATCCATCCACAATTTCTTTTCCACGACGAAGGAGACGAGGAATCAGCAGTTGCATTGGCCAATGGTGCTTCCACTCTGTATGCATTCTGTCAGCACCATTCTCATCTGAATCTTCCTCATCACCATGGAGAAGAAGGTTACAAAAATGACGATTTGCGCCTTGGTTGA 699 0.3991 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEGGMELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHLNLPHHHGEEGYKNDDLRLG* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0838 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr5g0838 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr5g0838 232 Coils Coil 85 105 - -
Mtr5g0838 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Mtr5g0838 232 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 231 - -
Mtr5g0838 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr5g0838 232 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g0838 232 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr5g0838 232 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Mtr5g0838 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr5g0838 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr5g0838 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr5g0838 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Mtr5g0838 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mtr5g0838 232 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0838 Mtr-Chr5 8220869 8223231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0838 1 220 MADS-box Gene Family AT3G54340 47.727 9.03e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr5g0838 K-box 8.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0838 K09264 - gmx:100784496 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0838 5 8220869 8223231 Mtr5g0838 5 8220869 8223231 ECH