Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0827 ATGGCTGGTTTATTTTCATTAGGAAGAACTGAAGAAGAAAACCAACAGAATAATAATCCAACAACAGAATTCTGGTATAATAAGAATGATGATTCTGTTGTTTCTAATAATTCATACCGTGGTTTTGAGATTTGGAACCAACATCAACAACAACAGTTGTTTTCTTTACAACAACCTCAACAACAAGATCTTTACTCCTCTGGTGTTGTGTTAGGAGTGGGACCTACTAATAGGGTTTGTTCTTCTGATGAGAATAGATCTACTGTGTTTATAGGAAGTGGAAGTGGAAGTATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAGAGTACTTGGGTTCCTGCTGCTAGAAGAAGAGAAAGACAACAACAACAACAACAACAACAACTTTCTGCTCCTAAATCATTTCAACAACATGGAGATATTGTTCCTCAAAATAGACACAGAGATCTTAACAATAACAATTCCTCTTTAGCTTGCACTCGTTTACCTACAAACCGTTCACTCACTCTCCCTTCAGCAGGGTTATTGGATGAGATGAATTTTCCAGCTGTGGTGAATTCTCCAGCAGAGTTCAGGTGCGTGAGAGTTAGCTCAGTTGATGAGAACGAAGAAGAGTATGCATATTCAACGGCTGTAAACATTGGAGGGCATGTTTTTAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAGTAATAGTTACAATATGGCTGCCGGAAACGCCTCTAATTCTAGTGGTACAGCCCTTGAAGGGGTGGTTGAGCCCTTAAACCTTATCTCAGGTGTCCCTGCTAGTGGTGTTGGGGAAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAATACCTTCATGCCTTCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA 972 0.3951 MAGLFSLGRTEEENQQNNNPTTEFWYNKNDDSVVSNNSYRGFEIWNQHQQQQLFSLQQPQQQDLYSSGVVLGVGPTNRVCSSDENRSTVFIGSGSGSISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQQQQQLSAPKSFQQHGDIVPQNRHRDLNNNNSSLACTRLPTNRSLTLPSAGLLDEMNFPAVVNSPAEFRCVRVSSVDENEEEYAYSTAVNIGGHVFRGILYDYGPDHGSNSYNMAAGNASNSSGTALEGVVEPLNLISGVPASGVGEIVDPSSLYPAPLNTFMPSSGTQFFPHPRS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0827 323 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g0827 323 MobiDBLite consensus disorder prediction 140 161 - -
Mtr5g0827 323 MobiDBLite consensus disorder prediction 9 24 - -
Mtr5g0827 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 323 IPR007818 GO:0003700|GO:0006355
Mtr5g0827 323 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 205 252 IPR006511 -
Mtr5g0827 323 Pfam Domain of unknown function (DUF702) 97 253 - -
Mtr5g0827 323 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 99 141 IPR006510 -
Mtr5g0827 323 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 323 - -
Mtr5g0827 323 MobiDBLite consensus disorder prediction 138 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0827 Mtr-Chr5 8121394 8123375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0827 1 323 C2H2 Transcription Factor Family AT3G51060 41.344 2.42e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mtr5g0827 DUF702 9e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0827 - - gmx:100814589 296.204