Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0820 ATGAGTATGAGACCCCCAATGGTTGGTCGTTTCTCTTCCTCCTCATTCACAAACATTGGTTCAGCATCATCATGGTTTGAGGTATATGCTTCATTCTCAACATTCATGATGCTTTTAAGAACTGCAATCAATGATCTCATACCCTTAAAACTTAGAAATTTCATCATCTCAAAGCTAACACGTTTCTTCACAGATTACCAACCAAATAACCAAGTTTCACTTCAAATTGATCAGTTTTGGGATGGAAGTACAAACCATCTTTACTATGCTGCCAAAGAGTATATCCCTACTAAAATATCCAACACTTACAAATCCCTTAAAGTTGGAAAAATATCCAAACATAACAACATGGTTCTAGCTTTTGATGGAAAACAAGTGGTGGAGGATGAGTTTGATGATATCAAGCTTAAATGGAGGCTTGTTGAAAATTCCAACAATGGTGATGGTTTTGATAATCCAAAAAAGGAGTATAAGGAATATAAGCATAGGTCAAAAGACTATGATGAAAATGGGTTTGTGTTAAGTTTTGATGAGAAGCATAGAGATAAAGTAATGGAAAAGTATATTCCACATGTTTTAAGCACTTATGAAGCTATAAAAGCAGGAAATAAAACTCTTAAGATTCATTCAATGCAATCTGGACCATGGAAACAAAGTGATTTAACACATCCTGCTTCATTTGATTCACTTGCTATGGATCCTGATCTAAAAAATTCTATAATTGATGATTTAGATCGATTTTTGAGGAGGAAAAAGTTGTATAAAAAAGTTGGTAAGCCTTGGAAACGTGGTTACTTATTGTATGGTCCACCAGGAACAGGAAAATCTAGTCTTATTGCTGCTATGGCAAAGTATTTGAAATTTGATGTGTATGATTTGGATCTTAGCTCAGTGTTTTCAAACTCAGAACTCATGAGAGCCATGAGAGAGACTTCTAACAGATCTATCATTGTTTTTGAAGACATTGATTGCAATTCAGAGGTGCTTGATCGAGCAAAACCAGACAAGTTTCCAGATATGGATTTTTTAGATGGGATTAAGATGGGTAAGAACATGCCGCCTAGAAAGTTTACTTTGTCTGGTCTGCTTAACTATATGGATGGTTTGTGGTCAAGTTGTGGAGAGGAACGAATTTTGATATTTACGACGAACCATAAGGATAAAGTAGACCCGGCATTGTTGCGCCCTGGTCGTATGGACATGCATATTCACCTTTCCTTTCTTAAGGCCAAAGCATTCAGAATCTTAGCTGCAAATTATTTGGACATTGAAGGAAATCATCACTCACTCTTTGAACAAATTGAAGAGCTATTGGAAAAGGTTGATGTCTCACCTGCAGTAGTGGCAGAGTATCTATTGAGAAGTGAAGATCCTGATGTTGCTCTTGGAGCACTTGTTAAATTTCTTCAAGATCAAGAAATTGTGAATGAAGAGACTAGTCAGGAAGTTTAG 1452 0.3616 MSMRPPMVGRFSSSSFTNIGSASSWFEVYASFSTFMMLLRTAINDLIPLKLRNFIISKLTRFFTDYQPNNQVSLQIDQFWDGSTNHLYYAAKEYIPTKISNTYKSLKVGKISKHNNMVLAFDGKQVVEDEFDDIKLKWRLVENSNNGDGFDNPKKEYKEYKHRSKDYDENGFVLSFDEKHRDKVMEKYIPHVLSTYEAIKAGNKTLKIHSMQSGPWKQSDLTHPASFDSLAMDPDLKNSIIDDLDRFLRRKKLYKKVGKPWKRGYLLYGPPGTGKSSLIAAMAKYLKFDVYDLDLSSVFSNSELMRAMRETSNRSIIVFEDIDCNSEVLDRAKPDKFPDMDFLDGIKMGKNMPPRKFTLSGLLNYMDGLWSSCGEERILIFTTNHKDKVDPALLRPGRMDMHIHLSFLKAKAFRILAANYLDIEGNHHSLFEQIEELLEKVDVSPAVVAEYLLRSEDPDVALGALVKFLQDQEIVNEETSQEV* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0820 483 SMART AAA_5 261 409 IPR003593 -
Mtr5g0820 483 Pfam Domain associated at C-terminal with AAA 47 141 IPR025753 -
Mtr5g0820 483 CDD AAA 262 406 - -
Mtr5g0820 483 ProSitePatterns AAA-protein family signature. 377 395 IPR003960 GO:0005524|GO:0016887
Mtr5g0820 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 457 IPR027417 -
Mtr5g0820 483 Pfam ATPase family associated with various cellular activities (AAA) 266 405 IPR003959 GO:0005524|GO:0016887
Mtr5g0820 483 Gene3D - 218 403 IPR027417 -
Mtr5g0820 483 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 18 476 - -
Mtr5g0820 483 PANTHER BCS1 AAA-TYPE ATPASE 18 476 - -
Mtr5g0820 483 Gene3D - 404 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0820 Mtr-Chr5 8071517 8074189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0820 263 437 Calmodulin-binding Proteins AT3G56690 28.649 5.72e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0820 - K08900 gmx:100787726 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0820 5 8071517 8074189 Mtr5g0820 5 8071517 8074189 ECH