Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0804 ATGGCGGTTAACGATGATCCTATGGTGGTTCCCACTCTCTCTCCGCCCAACACCTACGAAGCCGTCGTCAATGGTGGCACCTTCGACCGATTGCATGACGGCCATCGCCTCTTTCTCACTACTTCAGCTCAGTTGGCAAAGCACCGTATTGTCATTGGAGTTTGCGACGGTCCTATGCTTGCTAAGAAACAGTTTGCTGAACTCATTGAACCAATTGAGACAAGGATACATAATGTCAAAACTTTCATAAAGTCTGTTAAGCCAGAGTTGGAAGTGCAAGCTGTACCAATCACAGATCCTTATGGCCCTTCCATTATAGATGAAAAATTGGAGGCTGTGGTTGTGAGCAAAGAGACTTTACCTGGTGGATTGGCAGTAAACAGAAAAAGAGCTGAAAGAGGCCTCTCACAGTTGAAGATTGAAGTTGTAGATTTGGTCTCTGGAGAATCAGGTGAGATTAAGCTGAGTTCATCAATGTTGCGGAAGCTTGAGGCTGAAAAGGCCCAAAAACAAAGCACAATACCAATTGCAAAGATGAATGACTTGATGACAAAATCGTTCCTAAGTTATGTGGATTTGAAGAAACAGGCACAGAAAGATTTTGAAGATGTTGACCTTGAACTAGGGAACCTCAACCCAACACAAGACCCTAACCTCTCTCAATTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTAGATCTTCAGCAACTGAATGAAGAGACAAAATCCACTCACAGTGCGAAAGTTCTTCGCGGGTTAAGAGATCGAATGGATTCCGATATGGTTGCCGTGCTGCGCAAGGCAAATATTATCAAGGCTAGGTTAGAGGCTCTTCAAAAATCGAACATTGCGAATCGAAGCATATCAGAATGCTACAAAGAAGGAAGCCCTATTGATAGAACTAGAGTTTCTGTCACTAATGGTTTGAAGGTCAAGCTTAGGGACATGATGAATGATTTTCAGTCCTTGAGGGATAAAATTGTGTTGGATCATAAGGAGGATTTGAAGAGAAGGTACTACACTGTCACAGGCGAGGTACCTAGCGACGAGGTTATGGAGAAGATGATATCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGATATGCGTACTCAGGTTAGGCATGAAGCTGCGATGGATATTCAGAGAAGTTTGAATAAGCTTCATCAAGTTTTTCTTGATATGGCTATTTTGGTTGAGACTCAAGGCGAAAAAGTGGATAACATTGAGGATAATGTGGTCAATGCTGCTCAATACATTCATGGTGGAACTAGTAATCTTTACTATGCCAGCCAGATCAAGAAGAGGAACAGGAAATGGGTCTATTGGGTTATTGCTGTTTTGTTGATTGTGCTGCTGGTTTGTCTCATTGCAATGTTGGCTTCTTGA 1428 0.4244 MAVNDDPMVVPTLSPPNTYEAVVNGGTFDRLHDGHRLFLTTSAQLAKHRIVIGVCDGPMLAKKQFAELIEPIETRIHNVKTFIKSVKPELEVQAVPITDPYGPSIIDEKLEAVVVSKETLPGGLAVNRKRAERGLSQLKIEVVDLVSGESGEIKLSSSMLRKLEAEKAQKQSTIPIAKMNDLMTKSFLSYVDLKKQAQKDFEDVDLELGNLNPTQDPNLSQFFQEVEAIKVEMEEITNLLLDLQQLNEETKSTHSAKVLRGLRDRMDSDMVAVLRKANIIKARLEALQKSNIANRSISECYKEGSPIDRTRVSVTNGLKVKLRDMMNDFQSLRDKIVLDHKEDLKRRYYTVTGEVPSDEVMEKMISGSLKVEFLAGKTDADMRTQVRHEAAMDIQRSLNKLHQVFLDMAILVETQGEKVDNIEDNVVNAAQYIHGGTSNLYYASQIKKRNRKWVYWVIAVLLIVLLVCLIAMLAS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0804 475 Gene3D - 214 347 - -
Mtr5g0804 475 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 381 443 IPR000727 -
Mtr5g0804 475 Pfam SNARE domain 417 467 IPR000727 -
Mtr5g0804 475 Gene3D HUPs 21 171 IPR014729 -
Mtr5g0804 475 SMART tSNARE_6 376 443 IPR000727 -
Mtr5g0804 475 Coils Coil 226 253 - -
Mtr5g0804 475 SMART SynN_4 214 341 IPR006011 GO:0016020
Mtr5g0804 475 Pfam Cytidylyltransferase-like 25 162 IPR004821 GO:0003824|GO:0009058
Mtr5g0804 475 SUPERFAMILY Nucleotidylyl transferase 22 166 - -
Mtr5g0804 475 Pfam Syntaxin 221 416 IPR006011 GO:0016020
Mtr5g0804 475 Gene3D - 377 474 - -
Mtr5g0804 475 CDD SNARE_syntaxin1-like 385 440 - -
Mtr5g0804 475 CDD SynN 219 369 IPR006011 GO:0016020
Mtr5g0804 475 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 22 86 IPR004821 GO:0003824|GO:0009058
Mtr5g0804 475 PANTHER SYNTAXIN 182 471 IPR045242 -
Mtr5g0804 475 SUPERFAMILY t-snare proteins 216 436 IPR010989 GO:0016020|GO:0016192
Mtr5g0804 475 CDD PPAT_CoAS 22 162 - -
Mtr5g0804 475 PANTHER SYNTAXIN-112 182 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0804 Mtr-Chr5 7934784 7941016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0804 179 475 SNARE and Associated Proteins AT2G18260 58.632 4.00e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0804 K08486 - cpap:110822531 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0804 5 7934784 7941016 Mtr5g0804 5 7934784 7941016 ECH