Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0798 ATGTCGTTGAGAAGCATTGTACGGGAACTCAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCTAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGGTTGACGTTTCCTATTTCGTTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCGTATCTATTGTACTATGGACTGGTGCCATCTGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACTGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCCAACTTTTTGGGAACTAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAGTTCAACCAAATAGCCGGTCCAGTAGGAGATTTCATCCTAGGCAGGTGTCTCCGAGAGTTCCAGCATGTAACTACATTGTTAGCACCGTTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGGAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGATCATTTTTGTTCTGTGTCAGCACAAGAACAAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCACAGAGTTGTCGGTACAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGCGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTCCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA 1251 0.4492 MSLRSIVRELKEMRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGVQPNSRSSRRFHPRQVSPRVPACNYIVSTVAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDDHFCSVSAQEQKGKDPIGDLSNSTLTELSVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVPPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0798 416 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515
Mtr5g0798 416 Pfam F-box domain 55 101 IPR001810 GO:0005515
Mtr5g0798 416 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 416 - -
Mtr5g0798 416 Gene3D - 48 103 - -
Mtr5g0798 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Mtr5g0798 416 Gene3D Tubby Protein; Chain A 113 416 IPR025659 -
Mtr5g0798 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Mtr5g0798 416 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mtr5g0798 416 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mtr5g0798 416 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Mtr5g0798 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Mtr5g0798 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Mtr5g0798 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Mtr5g0798 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Mtr5g0798 416 PANTHER TUBBY-RELATED 1 416 - -
Mtr5g0798 416 Pfam Tub family 116 411 IPR000007 -
Mtr5g0798 416 MobiDBLite consensus disorder prediction 205 225 - -
Mtr5g0798 416 SUPERFAMILY Tubby C-terminal domain-like 104 416 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0798 Mtr-Chr5 7897894 7901528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0798 1 416 TUB Transcription Factor Family AT2G18280 62.143 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mtr5g0798 Tub 4.8e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0798 K19600 - gmx:100798958 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0798 5 7897894 7901528 Mtr5g0798 5 7897894 7901528 ECH
Mtr5g0798 5 7897894 7901528 Mtr8g2490 8 35298042 35301009 ECH
Mtr5g0798 5 7897894 7901528 Mtr8g2490 8 35298042 35301009 PCT