Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0797 ATGAGAACCAATAGTGGTGAAATAGTGGAGACTTTTCCAAATACCCTCTCCTTTCAGGTACATAGTAAAATATGCATAGAATTGATGAAAATAGTGGACAGCATCATGAGGATATTTCCAGACATAGAGGAAGCACGACCAAGATGTTCATCAGGAATAGAGTCTCTATGTTTTCTGAACAACTCAATTGAGAAAGCTAAATTACTTTTGCAACATTGCTCCGAATGCAGCAAACTCTACCTGGCTGTGACAGGAGAAACAGTACTTTCAAGATGCCAAAAAGCGAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTCATGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTATGCTACATTTGTTCTGGATTTTGCTGAAGAAGAGGCTGGGAGAGTTGTAAGAGAATTGCTTCATCAAGGTTCAACCTCAGATTCCGTGGACGACTTTGAAGTTAAAGCTCTTCAGTTTGCAGCACCAAGACTGAATATAACATCTCAAAAGGCCATTTTAATCGAGAGACGATCTATCAAGAAGTTTCTAGATAAAGTTGGACCAAATGACCCAAAAAAGAAGACGATCTTGAGATATCTTATGTATCTAATGAAAAAGCATGGAAACTTAATGGTGGTGGGAGAACACATGGAGAATTTTTATTCTCGTAGCGAAGAACCAATTGCAAGGGATAACTCTAGCCGTGATTCTCGACGAAGAAATCGTGTTGAGTCACATCATAGCATGAACTATGATCAGAATAAAACTGAGATGAATCAGTCAGATAGAGTGGCACCACCTGAGGAATACAAGTGTCCAATATCCTCAAGGCTGATGCATGATCCTGTTATCATTGCTTCTGGAGTAACATATGAAAGAATGTGGATAAGAAAGTGGATTAATGAGGGTAAAACTATATGTCCAAAAACAGAAAAGGAACTGCCTCATATGACATTGACTCCAAATATTGTCATGAAAGACTTGATATCAAAGTGGTGCAAAAATAATGGTGTCACCATTCCTGATCCAAGTAGACATACAGAAGATTTTATGTTGTTGGATGCTTCAATCACCTCCATTAAGAGTTTGGGAAGTTATTTCAATGATCTAAACTTGCCAATGGATCTTACTAACATGTCTCTTGGATCATTGGACAATAGTTTTAGTTCCGATGTGTCGCGAGTTAAGACCAATCATGCCTTGAATTTGATGATGACCAAGAGTAATGAAAATTCTCATCCTCACAAGGATACAGTTCATGCAGAGATACATGATACAGATTTGATGCTCTTGCCTCAACTTCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTGAAGATTTGAAAGATCATATGAAAAGCAATAGCCAAGCTATTTTGTCAGTGTCAGCTGAAAATTTAGTCGAACCAGTTGTCAGATTTTTAAGCAATGCAAATGATCGGCATGACTTAAAAGCACTGAGAGCCGGAACTCAGCTTCTGTCGGAATTTGTGAACAATTGCAGAAGTGGTATGGCTGACCTAAGTGAAGATACATTCATAAAGTTGGCAAATCTTCTTGACTCAGAAGTGATAGGAGATGTACTTGCCATAATGGAAGAACTTTCTGGAGATGGAAATAGTAAAGCCAAAATTGCAGCATCCAGTGCACTCACTTCTGTCTTAAAGTTACTTGATTCTGATAACAAAGGGTGCCAACAACATGCTATAAGAATAATATACAATTTGTCCTTCAACAGTGAAGTTTGTCCACACATGGTATCTGTCAATTGCATCCCAAAATTGCTACCTTTTTTCAAAGACAGAGCTGTTTTGAGATACTGCATATATATATTGAAAAACATTTGTGATACTGAAGAAGGTAGAAATTCTATTGCTGAAACAAAGGGATGCATAAGTTCTATTGCTGAAATACTTGAGAGTGGAAGTAATGAAGAGCAAGAACATGCACTTGATGTTCTACTATCTTTATGTACATGTTCTCAAAATGTGGATTATTGTAAGTTGATTTTGGATGAAGATGTTATCACTCCTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAGGAAAGTGCCTTGGAATTGCTTCATATTTTGAGAGATGCTAAATATGTTGAGAATGAAGATAGGTCCTCTCAGCCAATTACCAACAACAGTTCTACAGATTCCAACAGTCATCCTGAAGAAAATAGATCATCAAAGAAATCACAATTTCTGAAGAAACTAGGATTGTTCTCGAAATCTACTCCACATGCATCAAAACCCAGAAGGTGA 2304 0.3728 MRTNSGEIVETFPNTLSFQVHSKICIELMKIVDSIMRIFPDIEEARPRCSSGIESLCFLNNSIEKAKLLLQHCSECSKLYLAVTGETVLSRCQKAKKSLEQSLIPIQGMVPVMLAVEVSRIIDDLEYATFVLDFAEEEAGRVVRELLHQGSTSDSVDDFEVKALQFAAPRLNITSQKAILIERRSIKKFLDKVGPNDPKKKTILRYLMYLMKKHGNLMVVGEHMENFYSRSEEPIARDNSSRDSRRRNRVESHHSMNYDQNKTEMNQSDRVAPPEEYKCPISSRLMHDPVIIASGVTYERMWIRKWINEGKTICPKTEKELPHMTLTPNIVMKDLISKWCKNNGVTIPDPSRHTEDFMLLDASITSIKSLGSYFNDLNLPMDLTNMSLGSLDNSFSSDVSRVKTNHALNLMMTKSNENSHPHKDTVHAEIHDTDLMLLPQLHDLQWDSQCKVIEDLKDHMKSNSQAILSVSAENLVEPVVRFLSNANDRHDLKALRAGTQLLSEFVNNCRSGMADLSEDTFIKLANLLDSEVIGDVLAIMEELSGDGNSKAKIAASSALTSVLKLLDSDNKGCQQHAIRIIYNLSFNSEVCPHMVSVNCIPKLLPFFKDRAVLRYCIYILKNICDTEEGRNSIAETKGCISSIAEILESGSNEEQEHALDVLLSLCTCSQNVDYCKLILDEDVITPLFYISQNGNDKGKESALELLHILRDAKYVENEDRSSQPITNNSSTDSNSHPEENRSSKKSQFLKKLGLFSKSTPHASKPRR* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0797 767 Pfam Kinesin-associated protein (KAP) 535 667 - -
Mtr5g0797 767 MobiDBLite consensus disorder prediction 231 273 - -
Mtr5g0797 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 346 IPR013083 -
Mtr5g0797 767 SUPERFAMILY ARM repeat 437 709 IPR016024 -
Mtr5g0797 767 MobiDBLite consensus disorder prediction 231 258 - -
Mtr5g0797 767 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Mtr5g0797 767 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Mtr5g0797 767 SMART arm_5 463 507 IPR000225 GO:0005515
Mtr5g0797 767 SMART arm_5 546 586 IPR000225 GO:0005515
Mtr5g0797 767 SMART arm_5 626 667 IPR000225 GO:0005515
Mtr5g0797 767 SMART arm_5 587 625 IPR000225 GO:0005515
Mtr5g0797 767 MobiDBLite consensus disorder prediction 719 736 - -
Mtr5g0797 767 SUPERFAMILY RING/U-box 268 350 - -
Mtr5g0797 767 Gene3D - 436 719 IPR011989 -
Mtr5g0797 767 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Mtr5g0797 767 CDD RING-Ubox_PUB 277 319 IPR045210 -
Mtr5g0797 767 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 746 - -
Mtr5g0797 767 MobiDBLite consensus disorder prediction 717 767 - -
Mtr5g0797 767 PANTHER U BOX DOMAIN-CONTAINING 2 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0797 Mtr-Chr5 7892998 7897433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0797 17 755 U-box Gene Family AT4G36550 36.376 6.01e-142 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0797 - - mtr:MTR_5g020570 1521.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0797 5 7892998 7897433 Mtr5g0797 5 7892998 7897433 ECH
Mtr5g0797 5 7892998 7897433 Mtr8g2492 8 35306025 35312386 ECH
Mtr5g0797 5 7892998 7897433 Mtr8g2492 8 35306025 35312386 PCT