Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0794 ATGGAAACAAAGATGTCACAAACAACTTTAGGTTACAATAGAGATTCTTCTTCTTCTTCACCAACTCCACCACCACCACCTCAAGTTCACACATTAGTCTTCAATAACCCACCTCAAAATTCACACCCTAACCATAATACTACTACTAATCTTTATCCACCACCACATCTTGCACCTTCTTCTCAAAGACCTATCATAGATCCAGATCTAACGGCTGCAACAACAACTACTACCTCAATAACAACACAACCTCAACCACAACAAATAATACCATCAACAGCAACAAAAATATGTTACCGAGAATGTCTGAGAAACCACGCGGCAAGCATGGGAAGCCACGTGGTAGATGGATGTGGTGAATTCATGCCAAGCGGTGAAGAAGGTACCCCACAATACTTCAAATGTGCTGCTTGTGATTGTCACCGTAATTTCCATCGAAAACATGTCCAACAACAACATAGTATTCCTCAACAACATGTTCAGCATGTTCCTAATTATCATCATAGCAACAACAACGGTCACCTTAATCTTCCAACACCATCTTCTTCATCTCAAAGAGTTTCACAACCTAGTTCTGGACAAGTTCCACCGTCCATGATGATGACTTTTGGATCAGTTCCAGCTGAATCATCAAGTGAAGATCTCAATATGTTTGGTGCACAATTTTCCATACAGACGCCGCAGCAACCGCTTTCGAAGAAGAGGGTAAGGACGAAATTCTCACAGCAACAAAAAGATAAGATGATGGAGTTTGCTGAAAAGATTGGGTGGAAGATTCAGAAACATGATGAACAAGAAGTGCAACAGTTTTGTTCTCAAGTTGGTATCAAGAGACAGGTTTTTAAAGTTTTTATGCATAATAACAAACAAGCTATGAAGAAACAACAAATGTAA 894 0.3971 METKMSQTTLGYNRDSSSSSPTPPPPPQVHTLVFNNPPQNSHPNHNTTTNLYPPPHLAPSSQRPIIDPDLTAATTTTTSITTQPQPQQIIPSTATKICYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPQYFKCAACDCHRNFHRKHVQQQHSIPQQHVQHVPNYHHSNNNGHLNLPTPSSSSQRVSQPSSGQVPPSMMMTFGSVPAESSSEDLNMFGAQFSIQTPQQPLSKKRVRTKFSQQQKDKMMEFAEKIGWKIQKHDEQEVQQFCSQVGIKRQVFKVFMHNNKQAMKKQQM* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0794 297 ProSitePatterns Zinc finger C2H2 type domain signature. 135 159 IPR013087 -
Mtr5g0794 297 Gene3D - 221 294 - -
Mtr5g0794 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 164 IPR013087 -
Mtr5g0794 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 295 - -
Mtr5g0794 297 MobiDBLite consensus disorder prediction 1 18 - -
Mtr5g0794 297 MobiDBLite consensus disorder prediction 33 51 - -
Mtr5g0794 297 MobiDBLite consensus disorder prediction 1 51 - -
Mtr5g0794 297 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 39 295 - -
Mtr5g0794 297 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 99 148 IPR006456 -
Mtr5g0794 297 Pfam ZF-HD protein dimerisation region 97 149 IPR006456 -
Mtr5g0794 297 SUPERFAMILY Homeodomain-like 229 294 IPR009057 -
Mtr5g0794 297 MobiDBLite consensus disorder prediction 163 200 - -
Mtr5g0794 297 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 99 148 IPR006456 -
Mtr5g0794 297 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 233 290 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0794 Mtr-Chr5 7856339 7858183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0794 84 297 ZF-HD Transcription Factor Family AT2G18350 49.091 1.01e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr5g0794 ZF-HD_dimer 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0794 - - mtr:MTR_5g020510 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0794 5 7856339 7858183 Mtr5g0794 5 7856339 7858183 ECH