Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0785 ATGCTTTATAATTTTATCTCCTTTACTATATATATTTTGTATTTGTATGTACATGTCTCCATTTGCAATTCACGACAACGTGGACTGCAGGTGCTGACTAGTATTTCGACATTTTATTATCTTCAAACACTACAAGACAACAATTCACTCTTCTCTACTCTAAAAAACCCCTTCAAATCATTCATTTTCCATTACTCTTTTTCACAAAGAATGATGCATCGTTCATCTCAAGGGCAACACGTGATGGGACACTGTTCATGTGGTATGTTTCATGGACAAAACAACTCATTCTCAATGTTATTCTCCTCCTCTACACCTTATGATCATGAACCTGAAACATATTGCTTCACTCCTAATTCTTCATCTTCTTCTGTTGATTGTACTCTTTCACTTGGAACACCATCCACTCGTTTCACTGAAGATGAAGAGAAAAGAACCCGACATCATGAACGTCGTTCTGTCAAAAATTTCTGTTGGGATTTGTTAACACCTAAACAGTACAACAGTACTCAGTCTCAAACAAAGGCAACACGTGCAAGTACCAATAATAACAACAATGATTCTCTTCTTGCTCGTAGATGTGCAAACTGTGACACCACCTCCACACCGCTTTGGAGGAACGGCCCTCGAGGCCCAAAGTCATTATGCAATGCATGTGGGATCAGATTCAAGAAGGAAGAGAGAAGAGCAACTTCTGCCGCTGGCACAGCGACAGCGCCATCTATTGGCGTAATGGAGTCAGCTTCGATGTATAACCACCACCACCATCACAACAACAACAACAACTCATGGTACGTACAACCACAGAACCAGAAGATGCAGTGTTTCTCTCCGGCAATTACTAACGAGTTCCGTTTCATTGATGAAACCAATCATGATTCTGAAAATGGCATTCCATTTCTCTCTTGGAGACTCTGA 918 0.4052 MLYNFISFTIYILYLYVHVSICNSRQRGLQVLTSISTFYYLQTLQDNNSLFSTLKNPFKSFIFHYSFSQRMMHRSSQGQHVMGHCSCGMFHGQNNSFSMLFSSSTPYDHEPETYCFTPNSSSSSVDCTLSLGTPSTRFTEDEEKRTRHHERRSVKNFCWDLLTPKQYNSTQSQTKATRASTNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATSAAGTATAPSIGVMESASMYNHHHHHNNNNNSWYVQPQNQKMQCFSPAITNEFRFIDETNHDSENGIPFLSWRL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0785 305 CDD ZnF_GATA 193 225 IPR000679 GO:0006355|GO:0043565
Mtr5g0785 305 PANTHER GATA TRANSCRIPTION FACTOR 18 71 305 - -
Mtr5g0785 305 SMART GATA_3 188 241 IPR000679 GO:0006355|GO:0043565
Mtr5g0785 305 ProSiteProfiles GATA-type zinc finger domain profile. 188 224 IPR000679 GO:0006355|GO:0043565
Mtr5g0785 305 ProSitePatterns GATA-type zinc finger domain. 194 219 IPR000679 GO:0006355|GO:0043565
Mtr5g0785 305 Gene3D - 184 262 IPR013088 GO:0006355|GO:0008270
Mtr5g0785 305 PANTHER GATA TRANSCRIPTION FACTOR 18 71 305 IPR044272 GO:0003700|GO:0009908
Mtr5g0785 305 Pfam GATA zinc finger 194 228 IPR000679 GO:0006355|GO:0043565
Mtr5g0785 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0785 Mtr-Chr5 7742982 7744343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0785 75 305 C2C2-Gata Transcription Factor Family AT3G50870 42.456 5.92e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr5g0785 GATA 8.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0785 - - gmx:100790571 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0785 5 7742982 7744343 Mtr5g0785 5 7742982 7744343 ECH
Mtr5g0785 5 7742982 7744343 Mtr8g2508 8 35425992 35427173 PCT