Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0776 ATGGATCCCAAGAACAATGTGAAGAACGACGATCCTCCAGCGGAATCACCAACGTCAGTTCTTGAAGAAGAGGAAGTGGAGGTGAAATCGGAGGAAGAGGTGATTGCGGATGATGGGTCATCGCTTGTACCGAAAACAATGGCGGAGGAAGAAGAGAAGTTGCTGAAAGTTCGTGTAAAGGAAGAAGAGGAAAAGATTGAAGTTGCGCCGAATCTGAATGATTCACAGTTTAATAAGTTGGATGAGCTTTTGACACAGACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGATGATATTACAATGGCTGCGGGTGAACAAGAGAAACCGGATGAAGAAGAGAGTAAACCAGTTGCTAAAAAGAAGGGCCGTGGATCAAAAAGAAAGGCAGCTTCACAATGCAACACTGGAAAAGCCAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATGTGAAGACTGAAGATGTGGATTTGACTGAGGAAGAAAGAACTGAGAAAGAGCAGAGGGAGCTGATGCCTTTACTAACTGGTGGAAAATTGAAATCTTATCAACTGAAGGGTGTTAAGTGGCTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGGTTTCTTTCTCATCTAAAATCGAAAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGATGAATGAGATTAATAGGTTTACACCAACGCTCCCTGCTGTTATCTACCATGGTAACAAACATCAGAGAGATGAAATCAGAAGGAAACATATGCCCAGAACAGTTGGTCCAAAATTCCCTCTAGTAATAACTTCTTATGAGATTGCTATGAATGATGCTAAGAAGTGTTTAAGGTCATACAGTTGGAAGTATCTTGCTGTTGATGAGGGACACAGGCTGAAAAACGCAAACTGCAAATTAGTGAGGATGTTGAAATACATCAGTGTTGAAAATAAGCTTCTTTTGACTGGTACACCACTCCAGAATAACTTGGCTGAGCTATGGTCACTGCTGCACTTCATCTTACCTGATATATTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAACCTGTCAGGAAAGTGCACTACTGGAGCAACAATGGAAGAGTTGGAAGAGAAAAGAAGAACCCAAGTTGTGGCCAAGCTTCATTCAATTCTTAGGCCATTTCTGTTGCGTAGGATGAAATCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTATTTATGCCAACATGACTGAGCATCAGAAGAACTTGCAGGATCATTTAATTAATGAGACATTGGGGAAATATTTGGATAAGAAACGATCAATTGGACGTGCTCCAACGAGTCTTAATAATTTGGTAATTCAGCTTAGGAAAGTCTGTAACCATCCTGATCTCTTGGAATCAGTCTTTGATGGTTCATATTTTTATCCTCCTGTGAATGAGATAATTGAAAAATGTGGAAAATTTCAATTGCTCGACCGATTGCTGGAGCGGCTATTTGCACGGAATCACAAGGTTCTGATCTTCAGTCAGTGGACCAAAGTGCTAGATATAATGGATTATTACTTTAGTGAAAAGGGTTTCGAAGTTTGCAGGATTGATGGTTCGGTGAAGCTGGATGATAGGAAACGGCAGATCCAGGACTTCAATGATACAACCAGCAACTGCAGAATCTTTCTTCTTTCCACCAGGGCTGGTGGGTTGGGAATAAACCTCACTGCAGCCGACACTTGTATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCACAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCTACTGCACAATCAGTAGAGGGTCGGATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAGGAGCGCACAAAGCCTTCCATTATGGATGAAATGGAGGAAGAGGATGTTTTGGCATTGCTTCGAGATGAAGAAACCGCTGAGGACAAAATGATACAGAAAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGCGATCTTGTTATCAATAGCTCAACTGATGATAAAGCTGCAGTTAGTACCTTTTCTCTTAAAGGGCCTGGATGGGAGGTGGTGATGCCAACTGCGGCAGGGGGCATGCTTTCCACTCTTAACAGCTAA 2253 0.4163 MDPKNNVKNDDPPAESPTSVLEEEEVEVKSEEEVIADDGSSLVPKTMAEEEEKLLKVRVKEEEEKIEVAPNLNDSQFNKLDELLTQTKLYSEFLLEKMDDITMAAGEQEKPDEEESKPVAKKKGRGSKRKAASQCNTGKAKKAVEAMITRSKENVKTEDVDLTEEERTEKEQRELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKSKGLDGPYMIIAPLSTLSNWMNEINRFTPTLPAVIYHGNKHQRDEIRRKHMPRTVGPKFPLVITSYEIAMNDAKKCLRSYSWKYLAVDEGHRLKNANCKLVRMLKYISVENKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFESWFNLSGKCTTGATMEELEEKRRTQVVAKLHSILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKNLQDHLINETLGKYLDKKRSIGRAPTSLNNLVIQLRKVCNHPDLLESVFDGSYFYPPVNEIIEKCGKFQLLDRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDTTSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPSIMDEMEEEDVLALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDDKAAVSTFSLKGPGWEVVMPTAAGGMLSTLNS* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0776 750 Coils Coil 45 65 - -
Mtr5g0776 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 364 IPR014001 -
Mtr5g0776 750 MobiDBLite consensus disorder prediction 106 121 - -
Mtr5g0776 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 706 IPR027417 -
Mtr5g0776 750 Pfam Helicase conserved C-terminal domain 509 620 IPR001650 -
Mtr5g0776 750 PANTHER SNF2/RAD54 HELICASE FAMILY 10 749 - -
Mtr5g0776 750 MobiDBLite consensus disorder prediction 17 32 - -
Mtr5g0776 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 673 IPR001650 -
Mtr5g0776 750 CDD SF2_C_SNF 496 630 - -
Mtr5g0776 750 MobiDBLite consensus disorder prediction 1 45 - -
Mtr5g0776 750 SMART ultradead3 180 375 IPR014001 -
Mtr5g0776 750 Gene3D - 185 415 IPR038718 -
Mtr5g0776 750 SMART helicmild6 536 620 IPR001650 -
Mtr5g0776 750 PANTHER BNAC07G16550D PROTEIN 10 749 - -
Mtr5g0776 750 MobiDBLite consensus disorder prediction 106 140 - -
Mtr5g0776 750 Pfam SNF2-related domain 187 484 IPR000330 GO:0005524|GO:0140658
Mtr5g0776 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 414 IPR027417 -
Mtr5g0776 750 Gene3D - 420 723 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0776 Mtr-Chr5 7613146 7619213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0776 236 682 RAD5 or RAD16-like Gene Family AT5G05130 25.182 1.36e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr5g0776 SNF2_N 5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0776 K19001 - gmx:100777687 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0776 5 7613146 7619213 Mtr5g0776 5 7613146 7619213 ECH