Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0760 ATGAATCATCAAGACCAAATGATGCTTATGTCTCAGTTATTCCCAGCTTGTGAATACACCCAAATCATTTCTCAACAAGGAGAGAAGAAACCAAAGCCAAGACGCAAGCGTAGTAAGAAGAACAAAGGTGGAGAAAACAGTGCTAACGACATGAACAAAAAGAGGAAATTGAGTGATGAACAAGTGAATATTTTGGAAGAAAACTTTGGAAATGAACATAAACTTGAGTCAGAGAAGAAGGATAGGCTTGCAATGGAGCTTGGTTTAGATCCAAGACAAGTTGCAGTATGGTTCCAGAATCGAAGGGCTAGGTGGAAGAACAAGAAACTTGAAGAAGAGTACTTCAGTCTTAAAAAAATTCATGAATCCACCATTCTTGAGAAGTGTCTTCTTGAAACCAAGCTAAGGGAGCAACACTCAGAAGCATTAAAGCTAAGGGAGCAACTCTCAGAAGCTGAGAAAGAAATTCAAAGGCTTCGAGAGCCATTTGAAAGGGTAACAAGCAGCAGTTCAAGTACTTCATCCATGTCTCAGTCAGTGGAAGTTGTGGACCCACCTTTTCTTGGTGAATTTGGTGTTGATAACGGATATGATGACGACGTATTTTTCATGCCCAATGAAACATGTTACTACAATGGCATGGAATGGATAAGTTTGTACATGTAG 666 0.3964 MNHQDQMMLMSQLFPACEYTQIISQQGEKKPKPRRKRSKKNKGGENSANDMNKKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYFSLKKIHESTILEKCLLETKLREQHSEALKLREQLSEAEKEIQRLREPFERVTSSSSSTSSMSQSVEVVDPPFLGEFGVDNGYDDDVFFMPNETCYYNGMEWISLYM* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0760 221 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Mtr5g0760 221 MobiDBLite consensus disorder prediction 23 58 - -
Mtr5g0760 221 SMART HOX_1 51 112 IPR001356 GO:0003677
Mtr5g0760 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 3 220 - -
Mtr5g0760 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 220 IPR045224 GO:0003700
Mtr5g0760 221 Coils Coil 48 68 - -
Mtr5g0760 221 SUPERFAMILY Homeodomain-like 52 114 IPR009057 -
Mtr5g0760 221 Gene3D - 44 115 - -
Mtr5g0760 221 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Mtr5g0760 221 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Mtr5g0760 221 Coils Coil 135 162 - -
Mtr5g0760 221 MobiDBLite consensus disorder prediction 42 58 - -
Mtr5g0760 221 CDD homeodomain 53 109 IPR001356 GO:0003677
Mtr5g0760 221 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Mtr5g0760 221 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0760 Mtr-Chr5 7459292 7460888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0760 7 221 Homeobox Transcription Factor Family AT4G36740 54.587 1.15e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr5g0760 Homeodomain 7.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0760 K09338 - gmx:100810736 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0760 5 7459292 7460888 Mtr5g0760 5 7459292 7460888 ECH