Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0759 ATGAATCATCAAGACCAAATGATGCTTATGTCTCAGTTATTCCCAGCTTGTGAATACACCCAAATCATTTCTCAACAAGGAGAGAAGAAACCAAAGCCAAGACGCAAGCGTAGTAAGAAGAACAAAGGTGGAGAAAACAGTGCTAACGACATGAACAAAAAGAGGAAATTGAGTGATGAACAAGTGAATATTTTGGAAGAAAACTTTGGAAATGAACATAAACTTGAGTCAGAGAAGAAGGATAGGCTTGCAATGGAGCTTGGTTTAGATCCAAGACAAGTTGCAGTATGGTTCCAGAATCGAAGGGCTAGGTGGAAGAACAAGAAACTTGAAGAAGAGTACTTCAGTCTTAAAAAAAATCATGAATCCACCATTCTTGAGAAGTGTCTCCTTGAAACCAAGATGTTGAAGCTAAGAGAGCAGCTTTCTGAGGCAGAGAAGGAAATTCAACGCCTTCGAGAGCCTAATAGTAGCTCTAGTACTTCATCAATTTCACAATTCATGGAAGTAGTGGATCCACAATTTCATGATGAATTTGAAGTTAATCATATATATAATGATGATGTGTTTTTCATGCCGGATGCGACATATTACTTCAATGGCCAAGAATGGATTAATGTGTAG 624 0.3798 MNHQDQMMLMSQLFPACEYTQIISQQGEKKPKPRRKRSKKNKGGENSANDMNKKRKLSDEQVNILEENFGNEHKLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYFSLKKNHESTILEKCLLETKMLKLREQLSEAEKEIQRLREPNSSSSTSSISQFMEVVDPQFHDEFEVNHIYNDDVFFMPDATYYFNGQEWINV* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0759 207 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Mtr5g0759 207 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Mtr5g0759 207 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Mtr5g0759 207 MobiDBLite consensus disorder prediction 23 58 - -
Mtr5g0759 207 SMART HOX_1 51 112 IPR001356 GO:0003677
Mtr5g0759 207 Coils Coil 48 68 - -
Mtr5g0759 207 Coils Coil 135 155 - -
Mtr5g0759 207 MobiDBLite consensus disorder prediction 42 58 - -
Mtr5g0759 207 SUPERFAMILY Homeodomain-like 52 114 IPR009057 -
Mtr5g0759 207 CDD homeodomain 53 109 IPR001356 GO:0003677
Mtr5g0759 207 Coils Coil 100 120 - -
Mtr5g0759 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 3 207 - -
Mtr5g0759 207 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 207 IPR045224 GO:0003700
Mtr5g0759 207 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Mtr5g0759 207 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Mtr5g0759 207 Gene3D - 43 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0759 Mtr-Chr5 7459259 7476114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0759 7 207 Homeobox Transcription Factor Family AT4G36740 51.208 6.44e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Mtr5g0759 Homeodomain 6.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0759 K09338 - gmx:100810736 286.574