Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0727 ATGGCGAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTTGACAAATTGGGTGGTGCTTTTGCTCCTAAACCCTCATCTGGACCACACAAGTCCAGGGAATGTCTCCCACTCATTCTGATCTTGCGAAACAGATTGAAGTATGCTCTAACATACCGTGAAGTCATTGCTATTCTGATGCAACGACATGTCCTTGTTGATGGCAAAGTCAGGACTGACAAGACTTATCCAGCTGGATTCATGGATGTTGTTTCAATCCCCAAGACAAATGAGAGCTTTCGTCTGCTGTATGACACCAAGGGCCGTTTCCGTCTCCATTCAGTCAGAGATGATGAGGCAAAGTTTAAGCTGTGCAAGGTGCGTTCAGTGCAATTTGGGCAGAAAGGTATCCCATACCTGAACACCTATGATGGTCGCACTATCCGCTACCCTGACCCAGTCATCAGGGCTAATGACACAATCAAGCTGGACCTTGAGGAAAACAAGATTGTCGATTTCATCAAATTCGATGTTGGGAATGTAGTGATGGTTACTGGTGGTAAGAATAGGGGGCGTGTTGGAGTGATCAAGAACAGAGAAAAGCATAAGGGAACCTTTGAGACAATCCACGTTCAGGATGCCACTGGTCATGAGTTTGCAACTCGTCTGGTCAATGTGTTCACTATTGGCAAGGGGACAAAGCCATGGGTATCTCTTCCCAAGGGTAAGGGTATTAAATTAACTGTCATTGAGGAAGCTAGGAAGAGGGCTGCTGCAGCTCAGCAAGCAGTTGCTGCTTAA 798 0.4649 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNESFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGKNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLVNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRAAAAQQAVAA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0727 265 Pfam S4 domain 47 90 IPR002942 GO:0003723
Mtr5g0727 265 CDD KOW_RPS4 175 229 IPR041982 -
Mtr5g0727 265 Pfam Ribosomal family S4e 95 169 IPR013845 -
Mtr5g0727 265 SMART s4_6 42 106 IPR002942 GO:0003723
Mtr5g0727 265 SMART kow_9 174 201 IPR005824 -
Mtr5g0727 265 Gene3D - 122 172 IPR038237 -
Mtr5g0727 265 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Mtr5g0727 265 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 221 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mtr5g0727 265 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 265 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mtr5g0727 265 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mtr5g0727 265 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Mtr5g0727 265 Pfam KOW motif 177 210 IPR005824 -
Mtr5g0727 265 Gene3D - 175 245 IPR014722 -
Mtr5g0727 265 ProSiteProfiles S4 RNA-binding domain profile. 42 101 - -
Mtr5g0727 265 CDD S4 51 112 - -
Mtr5g0727 265 Pfam 40S ribosomal protein S4 C-terminus 212 258 IPR032277 -
Mtr5g0727 265 PANTHER 40S RIBOSOMAL PROTEIN S4 221 265 - -
Mtr5g0727 265 PANTHER 40S RIBOSOMAL PROTEIN S4 2 221 - -
Mtr5g0727 265 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Mtr5g0727 265 Gene3D - 1 117 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0727 Mtr-Chr5 7116772 7119448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0727 1 262 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.076 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0727 K02987 - gmx:100795220 499.59