Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0725 ATGGGTTGGTTTACGAAGTTTCTCAATGGCTCTAATCATAGAATTTCAGGAGGGCAATACAATGGCAAACATGGTGATGATAGGATTTGGGATAGTCATCATAGTTCAGTGGATGATTTGACGGATGTCGAAAAAGAAGACATCGATCGTGCAATTGCACTTTCTCTATCAGAGGAGGATCTGAAAGGGAAAAAAGTTGTTGAGGATGACTCTCAGTCTGAAGAAGATGAACAACTTTGTAAAATTGACGAGGACGATGAGAATGTTGGTAAAGTTCGACAAGATGAAGAGGACCTTCTAGCTAAAATTCAGCAGGCTGAAAATGAACGCCGTGCCAAAGATCAAGTTGAGGAAGACGAGCAACTTGCAAGGGCAATTCAATTAAGTTTGAGCACTGGTTCTCCTCCTCGACATGGCAAAGATTCTCTACCTCAACCTTCTCCCCACCTCTTTCCACCAGGATTCAGAATCTGTGCTGGATGCAATGCTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGGGGTCTGGCATCCACAATGCTTCCAATGCCATGCTTGCCATCTGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAACCGTCCTTACCATAAATCCTGCTACAGGGAGAAGCATCACCCAAGATGTGATGTTTGCAAGAATTTTATCCCGGCTAATTCAGCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGATACAAAAATACTGCCCAACACATGAGCTCGACAGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAAGGATTCAAAATATCTTTTTCTTGATGATGGTCGAAAGCTATGTCTTGAGTGTCTAGACTCGGCAATTATGGACAGTCATGAATGCCAACCTCTCTACCATGAAATACTAGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAAGTTCCTATGCTTTTGGTGGAAAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCATTTACCTGAAACTAGAGGACTCTGCTTGTCAGAGGAACAAACCGTCACCACAATTTTAAGAAAACCAAGTATAGGGGCAGGACACCGAGTCACAGACATGATAACCAAGCCTTATAGACTGACCCGTCGATGCGAAGTGACGGCCATTCTTGTTTTGTATGGCCTTCCTAGATTGTTGACAGGATCAATCCTAGCTCATGAGATTATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAACTTGAGGCCAGAAGTTGAAGAAGGAATCTGTCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGAATAACGATGCACCGTCTTCGTCTTCATCATCGTCAATGCTGCCGTCCTCTGCATCATCGAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTTGGCGAGTTTTTCAAAAACCAGATTGAGTCAGATACCTCACCAGCCTATGGAGATGGATTCAGATCGGGTTACCAGGCGGTACTTAAGTATGGGCTCAAAAGTACCCTTGATCATATCCATTTGACCGGAACTTTTCCATGTTGA 1578 0.436 MGWFTKFLNGSNHRISGGQYNGKHGDDRIWDSHHSSVDDLTDVEKEDIDRAIALSLSEEDLKGKKVVEDDSQSEEDEQLCKIDEDDENVGKVRQDEEDLLAKIQQAENERRAKDQVEEDEQLARAIQLSLSTGSPPRHGKDSLPQPSPHLFPPGFRICAGCNAEIGHGRFLSCMGGVWHPQCFQCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDSTPRCCSCERMEPKDSKYLFLDDGRKLCLECLDSAIMDSHECQPLYHEILEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRKPSIGAGHRVTDMITKPYRLTRRCEVTAILVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLRPEVEEGICQVLAHMWLESELYSGSGNNDAPSSSSSSSMLPSSASSKKGKRSDFEKKLGEFFKNQIESDTSPAYGDGFRSGYQAVLKYGLKSTLDHIHLTGTFPC* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0725 525 MobiDBLite consensus disorder prediction 447 471 - -
Mtr5g0725 525 Pfam LIM domain 158 213 IPR001781 -
Mtr5g0725 525 SMART uim 117 136 IPR003903 -
Mtr5g0725 525 SMART uim 43 62 IPR003903 -
Mtr5g0725 525 MobiDBLite consensus disorder prediction 63 88 - -
Mtr5g0725 525 SMART lim_4 157 209 IPR001781 -
Mtr5g0725 525 CDD LIM_DA1 158 210 - -
Mtr5g0725 525 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Mtr5g0725 525 Gene3D Cysteine Rich Protein 153 216 - -
Mtr5g0725 525 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 183 - -
Mtr5g0725 525 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Mtr5g0725 525 MobiDBLite consensus disorder prediction 447 467 - -
Mtr5g0725 525 PANTHER PROTEIN DA1-RELATED 2 1 524 IPR045218 -
Mtr5g0725 525 Pfam Protein DA1 307 519 IPR022087 -
Mtr5g0725 525 Coils Coil 89 116 - -
Mtr5g0725 525 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Mtr5g0725 525 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 524 - -
Mtr5g0725 525 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0725 Mtr-Chr5 7096490 7102468 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g0725 DA1-like 4.9e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0725 - - gmx:100817969 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0725 5 7096490 7102468 Mtr5g0725 5 7096490 7102468 ECH