Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0682 ATGGAACAACAACAACAATTGAACTTAGATTTGACTTTAGCCTCTGTTCCAAAAACCGTTTCTCATTTCCTCAACAACGTTGTTCAAACCAAAGACATGTCTCAGAAACTTTCAATGCTTGATGACTTAGTTCATAGCTTGGAAGAAGAAATGAAGAAAGTTCTTGCTTTCAAACGTGAACTCCCTCTTTCCATACTCCTCCTTAATGATGCTATAGCAAGATTGAATGATGAAAAAGAAAAAGTTAGGTTGATGAAAATGGATGATTTGAAAGAAAACTGTGATAATAAGAAGAATTGGATGAGTTCAGCTCAGCTATGGACTAATGAAACAAAATCGAATGAAGGTGATGATGATAGGACTGTGTTACATAAGGGTAATGGTGGAGAGGTATTTATGGGATTTACTGAAAATTTGTTGAAGGAGGTTTCACAAGCTAAGAGCTTTAGTTTGGTCTCTGAAGTGAGTCATGGAAATTCCAAGAGTGGTGGTGGAAGTTCCGGATCGTCTTTGTTGCGTGTTGAGATACAGAATCAACCTCAGCCGCCGCAACCTTTGCAGCAGAGTTCCAGGAAACAAAGGAGGTGCTGGTCGTCGGAGCTTCATCGCCGATTTGTTGATGCACTTCAACAGCTTGGTGGAGCACATGCAGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTATAGGCTCCATGTTAGAAGATTCCCAGTTTCTTCAATTCAGGAGGCTAACAAGTTAGCCTTATATATGGCTCATGATCAATGTGAAGAAGATACATCAGAGGGAAACTTCTCAGAGTCTGTTTCCCCACAGGGTCCTCTTACCCCTCTTCTCCTTGGTGGATCTGCTCAAGGTCTCTCAAGCCATGGAAGAAACAGTATGGATGCAGAAGATGAGCAATCAGATTGCAGGAATTGGAAAAGCGATTAG 978 0.408 MEQQQQLNLDLTLASVPKTVSHFLNNVVQTKDMSQKLSMLDDLVHSLEEEMKKVLAFKRELPLSILLLNDAIARLNDEKEKVRLMKMDDLKENCDNKKNWMSSAQLWTNETKSNEGDDDRTVLHKGNGGEVFMGFTENLLKEVSQAKSFSLVSEVSHGNSKSGGGSSGSSLLRVEIQNQPQPPQPLQQSSRKQRRCWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIQEANKLALYMAHDQCEEDTSEGNFSESVSPQGPLTPLLLGGSAQGLSSHGRNSMDAEDEQSDCRNWKSD* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0682 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 324 IPR044787 GO:0003700|GO:0006355
Mtr5g0682 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 249 IPR017930 -
Mtr5g0682 325 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 192 247 IPR006447 GO:0003677
Mtr5g0682 325 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 3 324 - -
Mtr5g0682 325 MobiDBLite consensus disorder prediction 273 325 - -
Mtr5g0682 325 MobiDBLite consensus disorder prediction 308 325 - -
Mtr5g0682 325 Gene3D - 191 248 - -
Mtr5g0682 325 Pfam Myb-like DNA-binding domain 194 245 IPR001005 -
Mtr5g0682 325 SUPERFAMILY Homeodomain-like 190 250 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0682 Mtr-Chr5 6681669 6683909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0682 2 242 G2-like Transcription Factor Family AT4G37180 44.737 1.59e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr5g0682 Myb_DNA-binding 6.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0682 - - pvu:PHAVU_002G021400g 305.834