Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0680 ATGTCGTCATCATCAAATTCACCGTGTGCGGCGTGTAAGTTTCTCCGGCGAAAATGCACTCAAGAGTGTGTTTTTGCACCGTATTTTCCACCGGACAATCCTCAAAGATTTGCATATGTACACAAAGTTTTTGGAGCTAGTAACGTGGCAAAGCTGTTAAACGAGCTTAACGCGACGCAGCGTGATGACGCGGTTAAGTCGTTGGCTTATGAGGCCGAGGCGCGGCTGAGGGATCCAGTTTATGGTTGTGTTGGTCTTATTTCACTTCTTCAGCATAAGCTAAGAGCTATTCAAGGTGAACTTAATAATGCTAAGAAGGAACTTGCTACTTATATTGGGCCTCAAGCGCTTCAAGGTATTCCCACAACTATTCTTCAGCAACAGCAGCAGCATAATAACCCTTTTGGTAATTCTCTTTACCCTTATAATGGTGGTGTACCCACAGTAACCGCGGGTGCACAGATGGTGATTCGTGACCCGCAGCAGACGCCTGCTGCGGCTCAGCATCAGATCTTGGAAGCTCAACAATTGGCTGCTGCTGTTGCTGCTAGAGAGCAACAGGAAATTTTTAGGACTTTTGAGAATCAACAACAGCAGCAACAGCAAGAGTTTTTAAGGTTTAGTGGTGGGTTTGATGTGGATTCAGTTTCTAATTCTTCTGCTGGTGGTGGGTTCAACCAAGTGTCCCCAGTTTCTGCTGTTGGTGTTGCTGCTGATCAATTGTCTCCTTCTTTGGCTTTGGGATCTTTTGATAATACTTATCATCACATGCAACAAGCACAACAAGGACAAGGAGGAGAATCTCATAATCTTCATCATCATCATAATCATCATCATCATCTTCCACTTCAGGCTCAGCTATTACTTCCACCACAACAGAAGCAAGCACAGCCACAAACTCATCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCTTGTTGA 957 0.4504 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGIPTTILQQQQQHNNPFGNSLYPYNGGVPTVTAGAQMVIRDPQQTPAAAQHQILEAQQLAAAVAAREQQEIFRTFENQQQQQQQEFLRFSGGFDVDSVSNSSAGGGFNQVSPVSAVGVAADQLSPSLALGSFDNTYHHMQQAQQGQGGESHNLHHHHNHHHHLPLQAQLLLPPQQKQAQPQTHQQQTESEECRSVGLGPC* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0680 318 Coils Coil 87 107 - -
Mtr5g0680 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 288 - -
Mtr5g0680 318 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 288 - -
Mtr5g0680 318 MobiDBLite consensus disorder prediction 288 310 - -
Mtr5g0680 318 MobiDBLite consensus disorder prediction 257 318 - -
Mtr5g0680 318 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mtr5g0680 318 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0680 Mtr-Chr5 6656864 6660568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0680 3 229 AS2 family AT5G66870 53.689 6.30e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g0680 LOB 4.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0680 - - mtr:MTR_5g017950 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2598 8 36518882 36519568 Mtr5g0680 5 6656864 6660568 PCT