Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0656 ATGTCGCAGCGGTCGGCGCCTGCGCCGTTTTTGTTGAAGACGTATCAGATGGTGGATGATTTAGCGACGGATGATGTGATATCATGGAGTGAGAGTGGTGAAAGTTTTGTTGTGTGGAAACATGCTGATTTTGCAAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTTGTTCGTCAGCTTAATACTTATGGATTCCGAAAGCTGGTGCCAGACAAATGGGAATTTTCAAACGAGAATTTCAAACGAAACCACAAACACCTCCTCACTGATATCAAACGCCGCAAAACCATCTCACAATCGTCGTCACAACCCGTAGAAGTCGAAAAAACCAGCGTCAATGACAACTCTCCGTCAAACTCTGGCAACGACGGAGTAGGATCCACCTCAACCTCTTCCTCCAATTCCAAAAACCCTGGATCAGTGGAAACAACAACACTTCCTCAATGTGTCAACTTATCGAGCGAAAATGAGAAACTAAAAAAAGACAACGAAACCTTAAATTGTGAATTGGCACGTGCAAAGAAACAATGCGAAGAGTTGGTGGCTTTTTTAAAAGACAATTTAAATGTGGGTCCAGATCAAATCGATCGCATAATGAAGCAACAAGGAAATTGTTGTGAATCTGTTCAAAATGCGGTTGGTGAAAATGAAGAAAGTGGAAGAGATTGTTTGAAATTGTTTGGTGTTTGGTTGAGAGAAGAAAATTACACAAACGAAAGAAACAATAAGAAGAGAGGTTGTGAAGACCAATTGAGCTTTGGTGGGCCTCGAGCTAAAGTGGGTAACAATGTTGTTGACTTTAGTGCTGTTAATGTTGTGAACATGATGAAAAGTGGCAAGGTTTGTAACTGA 867 0.4083 MSQRSAPAPFLLKTYQMVDDLATDDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDKWEFSNENFKRNHKHLLTDIKRRKTISQSSSQPVEVEKTSVNDNSPSNSGNDGVGSTSTSSSNSKNPGSVETTTLPQCVNLSSENEKLKKDNETLNCELARAKKQCEELVAFLKDNLNVGPDQIDRIMKQQGNCCESVQNAVGENEESGRDCLKLFGVWLREENYTNERNNKKRGCEDQLSFGGPRAKVGNNVVDFSAVNVVNMMKSGKVCN* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0656 288 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 288 - -
Mtr5g0656 288 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0656 288 Coils Coil 154 181 - -
Mtr5g0656 288 MobiDBLite consensus disorder prediction 99 153 - -
Mtr5g0656 288 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0656 288 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0656 288 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 288 IPR027725 -
Mtr5g0656 288 MobiDBLite consensus disorder prediction 96 153 - -
Mtr5g0656 288 Gene3D - 2 101 IPR036388 -
Mtr5g0656 288 Gene3D - 146 192 - -
Mtr5g0656 288 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0656 288 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0656 288 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0656 288 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0656 Mtr-Chr5 6393016 6395597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0656 2 288 HSF AT4G36990 49.175 2.40e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr5g0656 HSF_DNA-bind 4.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0656 K09419 - gmx:100791543 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0656 5 6393016 6395597 Mtr5g0656 5 6393016 6395597 ECH
Mtr5g0656 5 6393016 6395597 Mtr8g2629 8 36911909 36916036 PCT