Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0647 ATGGAGCAGAGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTTGATACCGAGGGTTTGAAAGAATATATGAGCAAATATGGTGAATTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGTTATGTTACATTTGCTTCAGTGGATGACGCCAAGGAAGTATTGTCAGGTGAACATGTTCTTGGTGATAGGATGCTGGAAGTCAAAGTGGCTACCCCAAAGGAGGAGATGAGGGCACCAGCCAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCAGTAACAGAAGAAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTCGGAAATGCAGAGTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTCGGAGGTTCTGCTGTAGTGGTTGATCGAGCTACACCTAAGGAAGATGACGTTAAGCCAACTGGCAGAATGTCACAGGGGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTCGGAGCTCCTACTTTGTATGACCATCCCGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGTAAAAAGATTTTTGTTGGTCGCCTCCCCCCAGAAGCAAATTCTGAGGATCTCCGTCAATATTTTGGAAGATTTGGCCGCATAGAAGATGTTTACATTCCCAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACATTTGCTGATGAAGGCGTAGCAGATCGTGTCTCTCTAAGGCCTCATGAGATTTGTGGACACGAGGTGGCAATAGATTCAGCCACACCTGTTGACGATGCTAGGCCCAGCGGAAATTTTATGATGAACAATAGTATGGAATCTTTTGGGGGATATGGCGGTCCGGTGCGAAGTTATGGGAGGATGTATGGTGGTTTAGACTATGATGATTGGGGTTATGGAGTTCCCAGTGTGAGGCCATCAAGAGCAGAGTATCAAGAGCAGCTTGGGAGGCCATCAAGAGCAGATTATCAGGAGCAGATTGGGAGGCCATCAAGAGCCGATTATCAGGAGCATATTGGGAGGCCATCAAGAGCAGATTGGAGGTACAGGCCATACTAG 1194 0.4531 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSLRPHEICGHEVAIDSATPVDDARPSGNFMMNNSMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPSVRPSRAEYQEQLGRPSRADYQEQIGRPSRADYQEHIGRPSRADWRYRPY* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0647 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 301 IPR000504 GO:0003723
Mtr5g0647 397 Gene3D - 221 306 IPR012677 -
Mtr5g0647 397 Gene3D - 84 194 IPR012677 -
Mtr5g0647 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mtr5g0647 397 PANTHER OS01G0945800 PROTEIN 3 397 - -
Mtr5g0647 397 SMART rrm1_1 93 164 IPR000504 GO:0003723
Mtr5g0647 397 SMART rrm1_1 226 297 IPR000504 GO:0003723
Mtr5g0647 397 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mtr5g0647 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Mtr5g0647 397 MobiDBLite consensus disorder prediction 357 384 - -
Mtr5g0647 397 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Mtr5g0647 397 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 397 - -
Mtr5g0647 397 SUPERFAMILY RNA-binding domain, RBD 89 191 IPR035979 GO:0003676
Mtr5g0647 397 SUPERFAMILY RNA-binding domain, RBD 224 325 IPR035979 GO:0003676
Mtr5g0647 397 Gene3D - 1 83 IPR012677 -
Mtr5g0647 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
Mtr5g0647 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Mtr5g0647 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0647 Mtr-Chr5 6300942 6305780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0647 6 274 Eukaryotic Initiation Factors Gene Family AT2G36660 23.443 1.40e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0647 K14411 - gmx:100795240 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0647 5 6300942 6305780 Mtr5g0647 5 6300942 6305780 ECH