Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0645 ATGGATGAAGACATACTGAAAAATTTGGGAAATGTTGAAAGCAACATGGACATGATGACAATGATGATGCAAATGGAAAAATTCTCTGATTCATATGAACCTTTTTATAGCAACACTCTCAATCTCAATCTCACCAACAATGATTTCCCTTATGGAAACTCAAATGTAACTTCATCACTCACACCTTCATTGATCAATCCACCATTGTCTTATCCTCTTCAACAACCAATGACACCACCGTTGCTTCAACCCAACAGAGTTCAAACTCAAATCCCATCAGGGAGAAACAACAATTCTTCACTCTCCTATCCGGAGAAGAAGAATTCAATGTCAGCAATGAGAGAAATGATATTCCGTATGGCGGTTATGCAACCGATTAACATAGACCCAGAAACCATAAAACCACCAAAGAGAAAGAATGTGAAGATTTCAAAGGATCCACAAAGTGTAGCAGCAAGACATAGAAGAGAAAGAATTAGTGAAAGAATAAGGATATTACAAAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTAGATGAAGCAATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACGTTGGAACAAGTTGGGGCAAATAGACCTTTGAATGTTGTTGGGTTTCCAGGAGTGGTTTCTAATGCTAATTTTAGTTATTCTTCTTTGATTAGAGGTTGTTCCCAACCTTGTCAAATGGTGGGTCCCACTTCCAAACAAATGCTTAGTTGA 744 0.3723 MDEDILKNLGNVESNMDMMTMMMQMEKFSDSYEPFYSNTLNLNLTNNDFPYGNSNVTSSLTPSLINPPLSYPLQQPMTPPLLQPNRVQTQIPSGRNNNSSLSYPEKKNSMSAMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPLNVVGFPGVVSNANFSYSSLIRGCSQPCQMVGPTSKQMLS* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0645 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Mtr5g0645 247 Pfam Helix-loop-helix DNA-binding domain 153 192 IPR011598 GO:0046983
Mtr5g0645 247 MobiDBLite consensus disorder prediction 85 105 - -
Mtr5g0645 247 Gene3D - 142 208 IPR036638 GO:0046983
Mtr5g0645 247 CDD bHLH_AtIND_like 144 200 - -
Mtr5g0645 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 202 IPR036638 GO:0046983
Mtr5g0645 247 SMART finulus 149 198 IPR011598 GO:0046983
Mtr5g0645 247 MobiDBLite consensus disorder prediction 129 155 - -
Mtr5g0645 247 MobiDBLite consensus disorder prediction 132 155 - -
Mtr5g0645 247 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 243 IPR045843 GO:0003700|GO:0006355
Mtr5g0645 247 PANTHER TRANSCRIPTION FACTOR HEC2 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0645 Mtr-Chr5 6266769 6267882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0645 58 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 62.353 8.67e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g0645 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0645 - - gmx:100796649 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0645 5 6266769 6267882 Mtr5g0645 5 6266769 6267882 ECH