Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0642 ATGAATTGGGTTCGTGGTCATTCACTTGGTAGTGGAAGCTTCGCCACCGTCTATTTAGCCAAACATCCTGAAGACTCGGTTACTTTTCCGCAGCTCACCGCCGTCAAATCCAGCAATCTTCACGACTCGTACTCTCTCCAAAACGAGAAACAAATACTCGATCGTTTAGGATCATCCCCACATGTTATCAAGTGTTTTGGCCAAGACAAAACTGTTGAAAACGATGAAGAGTATTACAATATTTTTCTAGAATACGCTAGCGGTGGAACTCTCTCCGATCAACTCGAGAAACATGGTGGTAAGCTCCCGGATAACCTCGTCCGCCGTTATACGAGGTCGGTAGTTGAAGGACTCAAGTATATTCACAAAAAAGGGTTTGTTCATTGTGATTTGAAGTTGCCCAACATTCTCGTATTCGAGAACGGAAACATTAAGATTTCAGATTTCGGGCTTGCGAAAGAGACAGGTGTAGAACAAGGTGAAAAGTGGCAACCGAGAGGAACTCCGATGATTATGTCACCAGAAGCAGTGAATGATAGTGTGTATGAATCGTCAGCCGATATATGGGCTCTTGGTTGCGCCGTCGTGGAGATGATTACCGGAGAACCCGCCGCATGGAATGAATCAGATATGTTGATGTTGACGATTCGAATTGGTGTTGGAGAAGAATTGCCAAAAATTCCAGAGGAATTATCACAAGAAGGAAAAGATTTTTTAGAAAAGTGTTTCATTAAGGATCCTTTGAGAAGATGGACAGCAGATATGCTCTTCAAACATCCGTTTATCTCCGATGTTGAAACTGTTTCAGTTGTAAATGAGTTAGTTGATGAGTTGCCATTGTCTTCACCTTCTCCAAAAACTTACTTCAATATGCTCATTGTGTTTCTTCTACTCGTACGACATTGCCTCCTATTTCAAATGAATGGAGTGAATAAAAAATAA 942 0.4172 MNWVRGHSLGSGSFATVYLAKHPEDSVTFPQLTAVKSSNLHDSYSLQNEKQILDRLGSSPHVIKCFGQDKTVENDEEYYNIFLEYASGGTLSDQLEKHGGKLPDNLVRRYTRSVVEGLKYIHKKGFVHCDLKLPNILVFENGNIKISDFGLAKETGVEQGEKWQPRGTPMIMSPEAVNDSVYESSADIWALGCAVVEMITGEPAAWNESDMLMLTIRIGVGEELPKIPEELSQEGKDFLEKCFIKDPLRRWTADMLFKHPFISDVETVSVVNELVDELPLSSPSPKTYFNMLIVFLLLVRHCLLFQMNGVNKK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0642 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Mtr5g0642 313 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 290 - -
Mtr5g0642 313 CDD STKc_MAPKKK 2 262 - -
Mtr5g0642 313 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0642 313 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 290 - -
Mtr5g0642 313 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Mtr5g0642 313 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Mtr5g0642 313 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0642 313 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0642 313 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0642 Mtr-Chr5 6240218 6241159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0642 1 263 MAP Kinase Kinase Kinase AT3G50310 54.074 1.26e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mtr5g0642 Pkinase 2.2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0642 - - mtr:MTR_5g017140 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0642 5 6240218 6241159 Mtr5g0642 5 6240218 6241159 ECH