Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0641 ATGGCAGCAATTGAGATGAAAACGATGAAGTCACGGTGTGGAGACGTCGGCACTACGATCTCCTCTGTTCGCGATCCCTCATGGTGGTTTGCACATGACAGTTTCGGCAATGAGCTTGAGTTTCCATTACCTTGTCCAACACGTTGTTGTCATACTGTTTATCATCCAGTTATTCGTGTTGATTATACACCTCCGATTGCGGGTATGTTTGTACCTCCATACCTGAAGGCTTTTGTGAAAGAGATGACTACTCTGTCCTCCGATGACAAGAACAAGAATTCTTTTCTGGTAGTAGGAGGCAACCTCCCACCCGAGACAAGGAACCATGATTTGCTTCAACTTTTCCAGCCTTTTGGTCATGTCATCGGTGCCGATATTGCTATTGCTCAACACACTGGCCTTAGTGGCCGTTTTGCCTTTGTTAACTTTGCCACCAAGGAAGCTGCTCAGAGTGCTATTGAAAGACTCAATGGGATCGACTACCACAATTTCATCCTTAGAGTTGAATGGTCCACCCCAACAACAACCTAA 531 0.4576 MAAIEMKTMKSRCGDVGTTISSVRDPSWWFAHDSFGNELEFPLPCPTRCCHTVYHPVIRVDYTPPIAGMFVPPYLKAFVKEMTTLSSDDKNKNSFLVVGGNLPPETRNHDLLQLFQPFGHVIGADIAIAQHTGLSGRFAFVNFATKEAAQSAIERLNGIDYHNFILRVEWSTPTTT* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0641 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 164 IPR000504 GO:0003723
Mtr5g0641 176 SMART rrm1_1 95 169 IPR000504 GO:0003723
Mtr5g0641 176 PANTHER - 60 175 - -
Mtr5g0641 176 Gene3D - 79 176 IPR012677 -
Mtr5g0641 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Mtr5g0641 176 SUPERFAMILY RNA-binding domain, RBD 92 174 IPR035979 GO:0003676
Mtr5g0641 176 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 60 175 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0641 70 176 Eukaryotic Initiation Factors Gene Family AT3G11400 46.296 4.63e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0641 K03248 - cit:102611620 95.1301