Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0637 ATGGCGGACGACGACGGTTCAAGCAGGAAGCGAAGACCAACTCGAGGCCCTGACGCCACCGCACGCAGCCAAGCCTTAGAACTTCTCCGATCCCGCAGATCCAACGGTCCTCGATCCACCACCACACCACAAATCCGACTCGAAAACCCTATCTACGACACAATCCCTGAGGATGAATACACCGCCTTAGTCGCCAGCCGCCGCGAACAATCCCGCTCATTCATCGTCGATGACGACGGATTTGGTTACAACGATGAAGGCGAAGAAGAGGATTGGTCCAAAGCCGGTTTCTCCCTTTCCTCAGACGAAGAATTCGATGGTGAATCGGAGAAACCTAAACGGAAGAAAGAGAAAGATGCTTCACAGATCAAGCGTCCTTCTGTTTCTTCTTCTGCGGCTAAATTATCAGCTGCTGCTGCTATGATGGGCGGATCAAGAGTTTCGTCGATGTTTACTTCTGCTAATTTTAAGAAAAGTAGAGATGATAAGGTTTGTGAGAGTATTGTAGATGATGTTCTTAAGGAGTTTGCGCCGGATGAGAACGATAAAATTAGTCGGAGAAAGGTTCAATCAAATTCGTCTTCTGTTGTTAATGATGCACGTATTAAGGCTATACCTAAGCCCTCTGCTGAATCTGTATTAGGCTCTTTTGCGAGTGAAAATTTCACGAAAATTGGTAATCGTGGAAATGGTGAAGTTGAATCTGTTAGGGTTAATAAGGATAGGGATAATGGATCTAGGTTAGGGTTAGTGGAAAAGAGTGAAGTAGAAGTGAATGAGAGTTTGGGAAATTGCGAGGGAGGAATGGTGGTGGAAGACAATGAATGTGGTAACGAGGATTTAGTTGAAGAGAAAGTGGCGTATGTGAAAGACGAAGAAATGGAAGTGAAACCTGTTGTGAAAAAGGAGGGTTTTACTTTGAATGCGAAAGTTAGTGAAGAAGCGGTGGATCCGAAGTTGTGTGCTACGGCTGGATGGCAGGCGGCTAGGAGTGGTGGAGGTGGAGGTGGGGAGGTAAATGTTGCTGATACGAATAATCAACAACAGACGGAGTTTAATTTGGAGCCAGAGGGGTCGTTGCCTTTTTACATACTTGATGCTTATGAGGAGTATTATGGAGCTAATATGGGTACTCTTTATTTGTTTGGCAAGGTCAAAACAGGGACTTTGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCATCCTTTGCATTCCACCAATGAGATGATACAGCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTGCAGATTTCCGTAAAAAGCTGCAAGACGCAGTATCTGATACAAAGAATGAGATAGCAAAACATCTGGTGGATCTGGGCGTTTCTTCCTTTAGCATGGCACCTGTCAAGAGGAAATATGCATTTGAAAGGACAGACATTCCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCTGTTCAAGGATACAGCACTTCCAGTAGACCTCAAAGGAAAAAGTTTCTGTGCTCTTCTTGGAGCTCGAAACAGTGCACTTGAGCTATTTCTGATTAAAAGAAAGATTAAGGGGCCTTCATGGCTACAAGTTTCAAACTTTTCTACCTGCTCAGCATCCCAAAGGGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCTCCTAAAGACATCAGGGCTTCTTCTCCATCTTCTTCAAAAATCACTCTAGTGAATCCCCCTGTGGTTGTCACAGCAATAAACTTGAAGACCACCATAAATGAGAAACAGAACATAAATGAAATTGTATCTGCATCTGTTGTCAGTTGCAATATGGTTAAGATTGACACTCCTATGCTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGATGGGAATATATTTCCAATGGGATTCAATACGGAGGTCACGGACAGAAACATAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTAATGTTACAATTACACAAGATGGACAGTGACGTTCTTGTTGGACATAATATTTCTGGATTCGACCTCGATGTTCTTCTCCACAGATCTCAGGCTTGTAGAGTACCAAGCAGCATGTGGTCTAAACTGGGCCGTCTCAACCGTTCTACGATGCCTAAGCTCGATAGAAGAGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATCATGTCTTGTGTTGCCGGTCGGCTTCTTTGTGATACATATTTATGTTCTCGTGACCTATTGAAGGAGGTTAGCTATTCTTTAACCCACCTTGCAAAAACACAGCTAAACCAGTCTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACTGCAAAATCCCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGTTGTCTATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACGCCAGTTGACTAATCTAAGTGGCAATCTATGGGGGAAAACTCTTCAGGGTGCCCGGGCACAGAGGGTGGAGTATCTTCTGTTGCATGAATTCCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCTAACTACGCAAAAGAAACAAAATTGACGAAGCGCAGAGTAACTCATGGTGTCGATGATGGCAACTTTGACGATGCAGATATCAATGATGCAAACTATCATAACGATGCTTCTGAAAGTGATCATAAGAAAAACAAAAAGGCTGCTTCCTATGCTGGAGGGCTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATACATATTACTTCTGGACTTCAACAGTCTATACCCTTCCATCATTCAGGAATATAATATCTGCTTCACAACTGTTGAAAGATCTTCAGATGATTCTTTTCCTCGTCTGCCATCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAAAAAGCTGGTTAAGTTGAGGCGAGAAAAAAAGACATGGATGAAAACTGCATCTGGTCTTAAACGTCAGCAACTGGACATTGAGCAGCAAGCACTGAAGCTTACGGCCAACAGTATGTATGGATGCCTTGGATTTTCCAATTCAAGATTTTATGCAAAACCACTGGCAGAGCTCATTACCCTACAAGGAAGGGAGATACTGCAAAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTTATTCAAGAGGTCAATAAGAAATATCGGTGCTTAGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTTAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTGTTAGCAAAAGATTTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGCGAAGATGTCGTCGAATCAATTCACAACTCTCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTAGCATTGGAAAAATACGTCATCACAAAGACATTGACCAAACCACCTGAAGCATATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACACATCTGGTTGCTCTGTTGGCGATACAATCCCTTATGTAATTTGCTGTGAGCAGGGTGGTAGTTCAGGCAGTGCGACTGGAATTGCTCTACGTGCCAGACATCCAGATGAATTGAAACAAGAACAGGGGACATGGCTAATTGATATTGATTACTATTTGTCACAACAGATTCATCCTGTGATATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCTGAAAGACTGGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCAAGTGATGATCCTACAAGCTCACTTTTATTTGCTGGTGATGATGAGGAGAGGTATCGGGGATGTGAGTCGTTGGTCTTATCATGCCCCAGCTGCTCTAGTGTATTTGACTGCCCTCCTGTGTTTAAATCTATTTGCATGCTGGGAAATGAAAAGCCAACCAGCTCAGGCACGGATGAATCTGACTACAATTTCTGGCGCAAGCTTTGCTGTCCCAAATGCTTTGAAAATGGTGCTGGTAGAATTTCTGCTGCAATGATAGCCAATCAGGTCAAACGGCAAGCAGAGAAGTTTGTTTTAATGTATTATAGAGGTTTACTAATGTGTGACGATGAAACGTGTAAGCATACAACTCGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTTTGTCCAAATTATCCTCGTTGCAACGGGCATCTTAATAGAAAGTACACTGAAGCGGACTTGTACAAGCAGCTCTCATATTTTTGTCATGTGTTTGATACTGTTTGTTATATAGAAAAGATGGAGGCAAAGTCTAGGATACCGATAGAGAAGGAGTTGATCAAAATCAGGCCAATAGTTGATCTTGCTGCATCAACAATACAAAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGATCTAGTTGTTGCAATTTAA 4641 0.4225 MADDDGSSRKRRPTRGPDATARSQALELLRSRRSNGPRSTTTPQIRLENPIYDTIPEDEYTALVASRREQSRSFIVDDDGFGYNDEGEEEDWSKAGFSLSSDEEFDGESEKPKRKKEKDASQIKRPSVSSSAAKLSAAAAMMGGSRVSSMFTSANFKKSRDDKVCESIVDDVLKEFAPDENDKISRRKVQSNSSSVVNDARIKAIPKPSAESVLGSFASENFTKIGNRGNGEVESVRVNKDRDNGSRLGLVEKSEVEVNESLGNCEGGMVVEDNECGNEDLVEEKVAYVKDEEMEVKPVVKKEGFTLNAKVSEEAVDPKLCATAGWQAARSGGGGGGEVNVADTNNQQQTEFNLEPEGSLPFYILDAYEEYYGANMGTLYLFGKVKTGTLYQSCCVVVKNMQRCVYAIPSHPLHSTNEMIQLEKDVQESRISPADFRKKLQDAVSDTKNEIAKHLVDLGVSSFSMAPVKRKYAFERTDIPAGENYVVKINYLFKDTALPVDLKGKSFCALLGARNSALELFLIKRKIKGPSWLQVSNFSTCSASQRVSWCKFEVIVDSPKDIRASSPSSSKITLVNPPVVVTAINLKTTINEKQNINEIVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNIKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHEVPKMFQTAKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNLSGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNYAKETKLTKRRVTHGVDDGNFDDADINDANYHNDASESDHKKNKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDDSFPRLPSSKTTGVLPELLKKLVKLRREKKTWMKTASGLKRQQLDIEQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYTSGCSVGDTIPYVICCEQGGSSGSATGIALRARHPDELKQEQGTWLIDIDYYLSQQIHPVISRLCASIQGTSPERLADCLGLDTSKFQHKSSEASDDPTSSLLFAGDDEERYRGCESLVLSCPSCSSVFDCPPVFKSICMLGNEKPTSSGTDESDYNFWRKLCCPKCFENGAGRISAAMIANQVKRQAEKFVLMYYRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFCHVFDTVCYIEKMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVAI* 1547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0637 1546 MobiDBLite consensus disorder prediction 1 52 - -
Mtr5g0637 1546 Pfam DNA Polymerase alpha zinc finger 1339 1542 IPR015088 GO:0003887|GO:0006260
Mtr5g0637 1546 MobiDBLite consensus disorder prediction 104 123 - -
Mtr5g0637 1546 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 249 1543 - -
Mtr5g0637 1546 CDD POLBc_alpha 912 1315 IPR045846 GO:0003887|GO:1902975
Mtr5g0637 1546 TIGRFAM pol2: DNA polymerase (pol2) 51 1297 - -
Mtr5g0637 1546 Gene3D - 402 528 - -
Mtr5g0637 1546 PRINTS DNA-directed DNA-polymerase family B signature 936 949 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mtr5g0637 1546 PRINTS DNA-directed DNA-polymerase family B signature 1012 1024 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mtr5g0637 1546 PRINTS DNA-directed DNA-polymerase family B signature 1065 1073 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mtr5g0637 1546 Pfam DNA polymerase family B 836 1299 IPR006134 GO:0000166|GO:0003677
Mtr5g0637 1546 Pfam DNA polymerase family B, exonuclease domain 392 770 IPR006133 -
Mtr5g0637 1546 Gene3D Helix hairpin bin 975 1026 - -
Mtr5g0637 1546 PANTHER DNA POLYMERASE 249 1543 - -
Mtr5g0637 1546 Coils Coil 1093 1113 - -
Mtr5g0637 1546 SMART polmehr3 577 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mtr5g0637 1546 MobiDBLite consensus disorder prediction 1 17 - -
Mtr5g0637 1546 SUPERFAMILY Ribonuclease H-like 357 865 IPR012337 -
Mtr5g0637 1546 CDD DNA_polB_alpha_exo 577 828 - -
Mtr5g0637 1546 Pfam DNA polymerase alpha subunit p180 N terminal 26 92 IPR024647 -
Mtr5g0637 1546 Gene3D DNA Polymerase alpha, zinc finger 1338 1531 IPR038256 -
Mtr5g0637 1546 SUPERFAMILY DNA/RNA polymerases 861 1314 IPR043502 -
Mtr5g0637 1546 Gene3D - 577 889 IPR036397 GO:0003676
Mtr5g0637 1546 MobiDBLite consensus disorder prediction 27 48 - -
Mtr5g0637 1546 Gene3D - 1143 1330 IPR042087 -
Mtr5g0637 1546 MobiDBLite consensus disorder prediction 74 136 - -
Mtr5g0637 1546 Gene3D - 362 561 - -
Mtr5g0637 1546 Gene3D Palm domain of DNA polymerase 905 1130 IPR023211 -
Mtr5g0637 1546 ProSitePatterns DNA polymerase family B signature. 1067 1075 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0637 Mtr-Chr5 6199158 6212030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0637 1 1544 Core DNA Replication Machinery Family AT5G67100 59.987 0.0 1824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0637 K02320 - gmx:100798779 2198.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0637 5 6199158 6212030 Mtr5g0637 5 6199158 6212030 ECH