Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0635 ATGGAACATAACAACAACAACAACAACATGTCTTCTTCACAAGACGAAATCTCTCTTTTTCTTCATCAAATTCTTCTCCGTTCATCTTCATCTTCTTCCATGCCAGGATCCATTAACCAGCTTCAAGATGGAAAGATCTCAGCCCTTGATTCAACTTCTAGATCAAACCATGCTATAAATGTCACTTCCTCTTCTGTTGGAGCAGGAGGAGGACTCAGTGGTAATGACACTGATGAATATGACTGTGAAAGTGAGGAGGGTGTTGAAGCATTGATTGAAGAAGTTCCAACAAAGTCAGTTGGTGCTTCTAGGAGTTCTTCAAAAAGAAGTAGAGCAGCTGAAGTTCATAATTTGTCAGAAAAGAGAAGAAGGAGTAGGATCAATGAGAAAATGAAAGCTTTACAAAATCTAATTCCAAATTCTAACAAGACTGATAAAGCTTCAATGCTAGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCATTGAGAAATGGATTGAGTTTGCATCCTATGTACTTTCATGAAGGCTTGCATTCTCTGCCTTTGTCTCGGATGAGTACGGAGTTGAGTGAAGGAAACGGTTCTAATCCTTTAAATATGACATCTACTCTGCCTCATCCCCAAGACAACCCCTTGCTCTATCCATCAAATCTACCAAACAAAAACACATTGCCGAGTCAGCCATCAATGTCTTCCTATCCTTCATATATTAACGACACGGAAACTTCTTTCGGGGTGGAATCTGGAATCCCAGCACAGAAAGAACGTCTTCAACGATCTTCAGAGCCAATGCACGGCGAAGACTTGTTGCAGCACCAGCAATTGAATGCAATAAATTCTTTTACCAATCTATTAGGTGGTTCTCAAGTTGTCAAAGAATTTCAGTCGGGCGCAATGGCTACATCTACTACTAACAATACTTTGCAAACTTGTGTCGCTGGAAGAGATCAGTCAGGAGTGGTCATGAGAAATAGCGAGCCCAACATTATATTTACATCGCAGTTAAGTAGGTAA 1035 0.4029 MEHNNNNNNMSSSQDEISLFLHQILLRSSSSSSMPGSINQLQDGKISALDSTSRSNHAINVTSSSVGAGGGLSGNDTDEYDCESEEGVEALIEEVPTKSVGASRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLSLHPMYFHEGLHSLPLSRMSTELSEGNGSNPLNMTSTLPHPQDNPLLYPSNLPNKNTLPSQPSMSSYPSYINDTETSFGVESGIPAQKERLQRSSEPMHGEDLLQHQQLNAINSFTNLLGGSQVVKEFQSGAMATSTTNNTLQTCVAGRDQSGVVMRNSEPNIIFTSQLSR* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0635 344 MobiDBLite consensus disorder prediction 109 123 - -
Mtr5g0635 344 CDD bHLH_AtPIF_like 114 173 - -
Mtr5g0635 344 PANTHER TRANSCRIPTION FACTOR SPATULA 9 287 - -
Mtr5g0635 344 Gene3D - 106 169 IPR036638 GO:0046983
Mtr5g0635 344 Coils Coil 150 170 - -
Mtr5g0635 344 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 287 IPR031066 -
Mtr5g0635 344 SMART finulus 117 166 IPR011598 GO:0046983
Mtr5g0635 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Mtr5g0635 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 171 IPR036638 GO:0046983
Mtr5g0635 344 MobiDBLite consensus disorder prediction 97 123 - -
Mtr5g0635 344 MobiDBLite consensus disorder prediction 60 80 - -
Mtr5g0635 344 Pfam Helix-loop-helix DNA-binding domain 115 161 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0635 Mtr-Chr5 6183463 6186706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0635 75 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 49.327 5.90e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g0635 HLH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0635 - - var:108334706 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0635 5 6183463 6186706 Mtr5g0635 5 6183463 6186706 ECH