Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0633 ATGGCCAACCAATACCGTTTAGGAAACCAACATAGTGAAGAAACTAACCCACATCGTGATGCAGTATATCTAAGACTTTTTGGGACAAATATTAGCATTATCAATGGAGGACCCAGAATTGTATTGTTCATCCCGGTTATTGGAGGACAAACTGGAGCTAGACCTACTGAACCTGTTGCAGGATCTGATTTTCAAAGAAGTGGAGTTGTTGCAGGAAACAGTAGTAATGTGAATTCCATTTCATCATTCAGCGATGGAATTAACCCCACTGCTACTGGTACTAGAAATGATGAGTTGTTTCGTGCTAGTTCACGGTTAAAGAGAAGTAGATCACATGATCCATTAACTAGAGGTGAAACTTCTAATCAAGGTTTACAAGTTGACCCTTCGCCGAGTAGTTCTGTACCACCACGGCAACCAATAACGACTTTAAACCCTTCACCGAGTAATTATTACCAGCTAAACCCTCCTCCAGCTCCTCTTGGATTCGGATTTACTATTGCTGCACAAACTGATCAGTACATTCAGACTAGTTCAGGATCGCCAAGATCAGAGAATGTAACTAGCCATGGTGGCATTCACCACAATTTCATTTCAACTTCTCATGAACTTAGGCCAGAGAGGAACAGGCTCAGGATTGAGAACTTTTCGGTACTTGATTACTGGGCCACTCAAAATCGGTGGCTTCATTCTCAAGAGCGCATAGATCGGATGACTAATTCAGAGGACTGGCTTTCAGATGAATGGCTGGACAAGGTAATGAAGGCGGGGCTGAGAGAGGAGGAAATCTCAGAGTCTATCCAGAAAGAAACTTACCAGCCTAACATTAAGGAAACAAGCACAATGAATCAAACTTGCACCATATGTCAGGAAGATTATATTGATGGGGAGCGTATTGGAAGACTTGATTGTATTCACCGTCACATATATCATCTTGACTGCATCAGCCAATGGTTGGAGGTCAAGAATGTTTGTCCAGTCTGTAAGGAGATAGCTCTGAGGATTTATGATGAAGATGAATAA 1023 0.4203 MANQYRLGNQHSEETNPHRDAVYLRLFGTNISIINGGPRIVLFIPVIGGQTGARPTEPVAGSDFQRSGVVAGNSSNVNSISSFSDGINPTATGTRNDELFRASSRLKRSRSHDPLTRGETSNQGLQVDPSPSSSVPPRQPITTLNPSPSNYYQLNPPPAPLGFGFTIAAQTDQYIQTSSGSPRSENVTSHGGIHHNFISTSHELRPERNRLRIENFSVLDYWATQNRWLHSQERIDRMTNSEDWLSDEWLDKVMKAGLREEEISESIQKETYQPNIKETSTMNQTCTICQEDYIDGERIGRLDCIHRHIYHLDCISQWLEVKNVCPVCKEIALRIYDEDE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0633 340 ProSiteProfiles Zinc finger RING-type profile. 286 329 IPR001841 -
Mtr5g0633 340 MobiDBLite consensus disorder prediction 78 99 - -
Mtr5g0633 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 332 IPR013083 -
Mtr5g0633 340 SMART ring_2 286 328 IPR001841 -
Mtr5g0633 340 MobiDBLite consensus disorder prediction 100 115 - -
Mtr5g0633 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 131 333 IPR045191 GO:0061630
Mtr5g0633 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 152 IPR045191 GO:0061630
Mtr5g0633 340 MobiDBLite consensus disorder prediction 78 150 - -
Mtr5g0633 340 SUPERFAMILY RING/U-box 285 332 - -
Mtr5g0633 340 Pfam Ring finger domain 285 329 IPR001841 -
Mtr5g0633 340 MobiDBLite consensus disorder prediction 116 150 - -
Mtr5g0633 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 4 152 - -
Mtr5g0633 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 131 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0633 Mtr-Chr5 6159493 6161721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0633 202 334 C3H Transcription Factor Family AT2G15530 33.099 2.03e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0633 - - mtr:MTR_5g016980 670.233