Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0632 ATGGCACATCAATTTCGTTTAGGAAATTGGCTAAGAGAGGAGAGCAGCCCGGTTCGCGAAGCAAGGCAATTAAGATATATGAGGCTAATCAATTCTTCAGATAATCATGCTTCATCTTCATCCTCTTCTCCTCCAAGATTATTTGGTTCGTCTCTTGGCATGGTTCCTACTAGTTACAATGCTTTGGGGGGTAGTAGCAGCAACAACAACAATAACCCTAGCACTAATTCCCACTTCATCAATGGAGGACTGGCACGCGCATCGTTCATCCCGGCTAGAGAAACTGGAGCTGGACCTGCTGTAGGATATGACTACCAAAGAAGTGGACCTCCTGCAGGAAATAGTAGTAATGCTAATTCCATTTCATCATTCTATGGAGGAATTAACAACAACACCACCACCACTGGTGGTCCTAGCAACGATGATGATCAACGTCGTGCTAATTTATTGTTAAAGAGAAGCAGATCACCAAATGCATTAAATAGAGGTGAAACTTCTGCTCAAGGTTCACAGGGTGATGAAGGTTCTAGTAGAAGACGCACTCTTCCTTCTTTTTTTCATACTCATCAAGACAACGTCAACATGTCGTCATCATCTTCATCAACATCTTGGAGGGACTTTGACAACACGATGAACGACGCTGCTCTTGCACGTGCAGGACCAAGTACTTATGGTACTACTTCTGCTACTTGGTCTCCACTTTATAGTCCTCCTCGTGGTACAATAGGTCTTTTTGAAGATGATCGTCCAATTCCATATCATAATGCACCTCATTCTGATTTTCTCACTGAGCCTCTCGATATTCCTAGCATGTTATGTCGTCAAGAGCATCCTAGGACAAACTTCAACATAGGAAGACACGATCCTTCTCCTGCTTCTAGATCCGCCTATGCATCATTTCTATATCCCTCTACAACAACAGGTGGAGCAAGAGGTTCTTCTTCTCGAAGCACAAGCCGGAGGCAGAACAACAACAATAACGTGGACATCTTTGATCTTATTCATGAACAACGAATGGATGAAGCATATGCTGAAAATATGATAAATGTTCAACAACATGCAAGGTTATTGCCAGGAGGCCGTGTAAATCGATTTAGTGTTCCAACTATTAATCTTGGGATGCCTAGCAGTTTTGTACCACCACGGCAACCACCTCCACCTTCAGATCCATCATTGAGTAATTACATGCTAAATCCTCCTCCACCTCCTCCTAGATCGAGGTTTAGCACTGTTGAACAAACTGGTGAGTACATGCAGACCAATTCAACATTCGCAAGATCAGAGAATCCATCTCGTCCTGGCGGTAATAACCGCATTTTCATTTCAACTTCTAATGAACTTAGGGAAGAGAGGAACGCTCTCAGGGATGAGATTTTTAACACCATACATCATCTTCGCAACGGTGGCTCTGCGCGTATAGAGGACTTGCTTTTACTTGACTGCTCAATTGTCCTAAATCTATTGGACTCTCAAGAACTCATGGATCAAATGAATGATTCAGATGACTGGCCGTACGAGATAATTTCGGCACTTGAGAGTGATCAATGGGAGAGTGTTGAGACAGGACTGACAGAACAAGAAATCTTCAGATACATTCAACAGGAAACTTATCGGATCAATCTTGAGGAAACAAGTACTCAGAATCAAACATGTACCATATGCCAGGAGGACTATGTGAAGGGCGAGAGAATCGGCAGACTTGATTGTATGCATATCTTTCATCTTGACTGCATCAAACAATGGCTGGAATTGAAGAATGTCTGTCCAATCTGCAACCAGACAGCGCTAGAAATTGATGAAGATGAGGAAGAAACGTAG 1818 0.429 MAHQFRLGNWLREESSPVREARQLRYMRLINSSDNHASSSSSSPPRLFGSSLGMVPTSYNALGGSSSNNNNNPSTNSHFINGGLARASFIPARETGAGPAVGYDYQRSGPPAGNSSNANSISSFYGGINNNTTTTGGPSNDDDQRRANLLLKRSRSPNALNRGETSAQGSQGDEGSSRRRTLPSFFHTHQDNVNMSSSSSSTSWRDFDNTMNDAALARAGPSTYGTTSATWSPLYSPPRGTIGLFEDDRPIPYHNAPHSDFLTEPLDIPSMLCRQEHPRTNFNIGRHDPSPASRSAYASFLYPSTTTGGARGSSSRSTSRRQNNNNNVDIFDLIHEQRMDEAYAENMINVQQHARLLPGGRVNRFSVPTINLGMPSSFVPPRQPPPPSDPSLSNYMLNPPPPPPRSRFSTVEQTGEYMQTNSTFARSENPSRPGGNNRIFISTSNELREERNALRDEIFNTIHHLRNGGSARIEDLLLLDCSIVLNLLDSQELMDQMNDSDDWPYEIISALESDQWESVETGLTEQEIFRYIQQETYRINLEETSTQNQTCTICQEDYVKGERIGRLDCMHIFHLDCIKQWLELKNVCPICNQTALEIDEDEEET* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0632 605 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 530 596 IPR013083 -
Mtr5g0632 605 MobiDBLite consensus disorder prediction 378 407 - -
Mtr5g0632 605 MobiDBLite consensus disorder prediction 375 407 - -
Mtr5g0632 605 ProSiteProfiles Zinc finger RING-type profile. 551 592 IPR001841 -
Mtr5g0632 605 MobiDBLite consensus disorder prediction 101 180 - -
Mtr5g0632 605 SMART ring_2 551 591 IPR001841 -
Mtr5g0632 605 SUPERFAMILY RING/U-box 533 597 - -
Mtr5g0632 605 MobiDBLite consensus disorder prediction 154 180 - -
Mtr5g0632 605 MobiDBLite consensus disorder prediction 302 324 - -
Mtr5g0632 605 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 597 IPR045191 GO:0061630
Mtr5g0632 605 Pfam Ring finger domain 550 592 IPR001841 -
Mtr5g0632 605 MobiDBLite consensus disorder prediction 109 142 - -
Mtr5g0632 605 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 4 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0632 Mtr-Chr5 6145887 6148510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0632 451 597 C3H Transcription Factor Family AT2G15530 37.086 3.35e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0632 - - mtr:MTR_5g016960 1084.71