Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0631 ATGGCCCATCAAGGGAGGCCTGGTACTTCTGCATCACCACCAACAAACCCTCCTCGTCGGGTGCGGACAATGCAGACAATATCAGCGAATCCAGTTCGTGATCTTTGGGCAGCAAGGAATAGGCTCACGGAAGAGTTGTTGGCAAGGGACTTGCAAAATGAATCTCAAGAAAGCACTGATAATTCAGAGAGTAGTGACGAGGAAATGGGAGGGCTTACAGAGCAGGAAATCCTCAGGCACATCCAACAAAAGACTTACCAGTCCTGCCCTAATGAAACAAGCACCCATAACCAAACCTGTACCATATGCCAGGAAGACTATGTGGAGGGGGAGAAGATTGGTAGACTTGATTGTATGGATATATTTCATCTTGACTGCATCAAACAATGGTTGGAGCTGAGGAATGTTTGTCCAATCTGTAAGGAGACAGCTCTGGAAATTGATGAAGATGAGGATGCATAA 462 0.4632 MAHQGRPGTSASPPTNPPRRVRTMQTISANPVRDLWAARNRLTEELLARDLQNESQESTDNSESSDEEMGGLTEQEILRHIQQKTYQSCPNETSTHNQTCTICQEDYVEGEKIGRLDCMDIFHLDCIKQWLELRNVCPICKETALEIDEDEDA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0631 153 Pfam Ring finger domain 99 141 IPR001841 -
Mtr5g0631 153 ProSiteProfiles Zinc finger RING-type profile. 100 141 IPR001841 -
Mtr5g0631 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 49 146 - -
Mtr5g0631 153 MobiDBLite consensus disorder prediction 47 77 - -
Mtr5g0631 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 49 146 IPR045191 GO:0061630
Mtr5g0631 153 SUPERFAMILY RING/U-box 88 146 - -
Mtr5g0631 153 MobiDBLite consensus disorder prediction 1 28 - -
Mtr5g0631 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0631 Mtr-Chr5 6128107 6128988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0631 71 146 C3H Transcription Factor Family AT2G15530 48.101 1.55e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0631 - - mtr:MTR_5g016920 305.449