Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0625 ATGTGGGATCTGAATGACTCACCTGATCAGAGAAAAAACTATGAATCAGAAGGGTGTTCAATGGAAGGTGATGAAGTTGATGTTGATGAAAAAGGAAAAGGAGTTGGATCTGTTTCAAATTCAAGTTCATCAGCAATAGTTATAGAAGATGGATCGGAAGAAGAAGATGGTAACATGACGAAGAAAAAGAGTAGTAAGATATTTGGATTTTCAATGGATGATAGTAGTGACTGTCCACCTGTGACTAGACAGTTTTTTCCGGTAGAGGATTCTGAGACGATAACAACGGTGGTAGATTCTTCTTCCGGTGGTGGTGGTGGAAGCTCTTCTTTTCCAAGAGCTCATTGGGTAGGTGTAAAATTTTGTCAATCAGAATCTGTTAACGGTGGTAAAATAGTTGAAGCTTCACAACCGATGAAGAAGAGTCGTAGAGGACCAAGGTCCAGAAGTTCTCAGTATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGGGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACAAAGGAAGAATTTGTTCATGTACTACGGAGACAAAGCACTGGATTTCCAAGAGGAAGTTCTAAATATAGAGGTGTGACTTTGCATAAATGTGGAAGATGGGAGGCTCGAATGGGTCAATTCTTAGGCAAAAATTTGATTCAATTTACCAGGTATGTTTATCTGGGTTTGTTTGACACTGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATTAAATGCAATGGTAAAGAGGCTGTCACCAATTTTGATCCCAGCATCTATGATAATGAACTTAATTCTGAATCATCAGGTAACGCTGCAGATCACAATTTGGATTTGAGTTTGGGAAATTCAAGTTCTAAATGTAGCAATAATAATCAAGCATTTGGGAATCATAACACAAATGCCACCACTGATCAATACATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCAGACCTAAGCCTGTGAATATACTACCAAAACCATGTGGTATAAATAACATGGATGGCTTTGTAAGGGATGGGTATGGAGAGAATGAAACCTTGAGGATGCTAAGCCAAACTCATCTTCATCAATCTTCAATTGCCACTAATGAAATGCATAGATTTGGTCCCTATAGGTCACCTATGATTGAACAACACCCTCAAATGCTTCACAATTTTCCACATCTTCACCCCTCAAATTTTCATGTTTCGAGCAGCAGCAGCAATGGAGGCCGAATCGGAAGTGATTTAACATTATCAATGTCTGATCAACAAAAATGGCAAACAGGGCCTCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTGA 1554 0.4003 MWDLNDSPDQRKNYESEGCSMEGDEVDVDEKGKGVGSVSNSSSSAIVIEDGSEEEDGNMTKKKSSKIFGFSMDDSSDCPPVTRQFFPVEDSETITTVVDSSSGGGGGSSSFPRAHWVGVKFCQSESVNGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKNLIQFTRYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGNAADHNLDLSLGNSSSKCSNNNQAFGNHNTNATTDQYMAPESNWRNGGIRPKPVNILPKPCGINNMDGFVRDGYGENETLRMLSQTHLHQSSIATNEMHRFGPYRSPMIEQHPQMLHNFPHLHPSNFHVSSSSSNGGRIGSDLTLSMSDQQKWQTGPPPHLLATAAASSGFPPQIRPSSSQGWLQKNGFHTLMRPS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0625 517 CDD AP2 152 209 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 515 - -
Mtr5g0625 517 SUPERFAMILY DNA-binding domain 243 309 IPR016177 GO:0003677
Mtr5g0625 517 ProSiteProfiles AP2/ERF domain profile. 244 307 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 515 - -
Mtr5g0625 517 ProSiteProfiles AP2/ERF domain profile. 152 208 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 MobiDBLite consensus disorder prediction 1 60 - -
Mtr5g0625 517 SMART rav1_2 152 214 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 SMART rav1_2 244 313 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 MobiDBLite consensus disorder prediction 470 517 - -
Mtr5g0625 517 MobiDBLite consensus disorder prediction 492 508 - -
Mtr5g0625 517 Pfam AP2 domain 152 200 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 Pfam AP2 domain 243 298 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Mtr5g0625 517 MobiDBLite consensus disorder prediction 1 32 - -
Mtr5g0625 517 Gene3D AP2/ERF domain 243 308 IPR036955 GO:0003700|GO:0006355
Mtr5g0625 517 Gene3D AP2/ERF domain 151 210 IPR036955 GO:0003700|GO:0006355
Mtr5g0625 517 PRINTS Ethylene responsive element binding protein signature 245 256 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Mtr5g0625 517 CDD AP2 243 309 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0625 Mtr-Chr5 6070828 6074493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0625 1 337 AP2-EREBP Transcription Factor Family AT4G36920 68.286 1.30e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Mtr5g0625 AP2 7.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0625 K09284 - gmx:100786333 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0625 5 6070828 6074493 Mtr5g0625 5 6070828 6074493 ECH
Mtr5g0625 5 6070828 6074493 Mtr4g3378 4 47101905 47105538 PCT