Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0623 ATGGACGGTGGAAGAGGAAAAGGAGAGAGAAAGAGAAACGGTGGTGGTGTTGGTGTTGATGGAGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGAAAATGGGTAGCTGAAATTCGAGAACCAAACAAACGTTCTCGAATTTGGTTAGGTTCCTATTCTACCCCTATCGCCGCCGCAAGAGCTTACGACACCGCCGTTTTCTACCTCCGGGGACCATCAGCTCGTCTCAATTTCCCAGAGCTACTCAACGGTGAAAACAACGCGGTTGTTGGTGGTGGTGATATGTCGGCGGCTACTATTCGAAAGAAAGCTACTGAAGTTGGTGCTAGAGTTGATGCTCTTCAAGCAGATGTTAATCATCATAGTCATAGCCATAGTCATAATCATAATCATCATCACCTTCAGCATAACCGGAACCAGCATCATCGTGTTATGCCGGTTCCGGAGTTGCTTGAAGGTGATGGTTCTGGTGATTTTGCTGAGAGAGTTGATTTGAATAAGATTCCTGAACCAGAGAGTTCTGATGAGTGGGATGTTAATTGA 549 0.4554 MDGGRGKGERKRNGGGVGVDGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELLNGENNAVVGGGDMSAATIRKKATEVGARVDALQADVNHHSHSHSHNHNHHHLQHNRNQHHRVMPVPELLEGDGSGDFAERVDLNKIPEPESSDEWDVN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0623 182 MobiDBLite consensus disorder prediction 157 176 - -
Mtr5g0623 182 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Mtr5g0623 182 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Mtr5g0623 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 7 178 - -
Mtr5g0623 182 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Mtr5g0623 182 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Mtr5g0623 182 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Mtr5g0623 182 MobiDBLite consensus disorder prediction 122 182 - -
Mtr5g0623 182 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Mtr5g0623 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 178 - -
Mtr5g0623 182 MobiDBLite consensus disorder prediction 126 142 - -
Mtr5g0623 182 MobiDBLite consensus disorder prediction 1 21 - -
Mtr5g0623 182 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Mtr5g0623 182 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0623 Mtr-Chr5 6034197 6035256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0623 14 178 AP2-EREBP Transcription Factor Family AT5G67190 60.440 3.47e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0623 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0623 K09286 - gmx:100783682 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0623 5 6034197 6035256 Mtr5g0623 5 6034197 6035256 ECH