Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0613 ATGGAACCCGCTCCTCCATCTTCGAAGACTGAACCTTACTCCGCCAAAGTACCTGCTGAAAATGACAATGCACGTGATTCACCATCCTTGTCACCAGTTTCTAGCATATCTTCCTGGGCGAGAAATCTGAGGTTTGGGGCTGCAGATCAGAACTCACAGACAGAGAACAATGGCATGTCAGCATTTGCTCGTCTTACTAGTGGGATTGGACTACGAAGTCCCCCAAATGAGCTTGCTACGAGCAGTTCAGGAGCCGAGCAACCTAATATAATTGAATCATTCACTAAAGGGTTGGTGGACTCTTCAAAGGAAGCAGTAAAGGCAGTGCAGACCAAAGCACGACATATTGTTTCTCAAAATAAACGCAGATACCAGGAAGGTGGATTTGATTTGGATATGACATACATCACTGAAAATATAATAGCTATGGGATTTCCTGGTGGTGATTTTAGCTCTGGAATTTTTGGGTACATTGAGGGGTTCTATCGAAATCACATGGAAGAAGTAATCAAGTTTTTTGAAACTCATCACAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAGAGGTTGTACGATGGATCACTTTTCCAGGGGAAGGTTGCAAGTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCGAAGTGCATATTCATGGTTGAAGGAGGATATCCAAAATGTGGTCGTTGTTCATTGTAAAGCTGGTATGGGAAGGACAGGACTGATGATTTGTAGCCTTCTTTTGTATCTTAAGTTTTTCCCCACTGCTGAGGAAGCCATTGATTCCTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAACTCTCCCAAGTCAAATTAGATATGTCAAATATTTTGAACGGACCTTAACACACTTCAACGGAGAAGTCCAGCCCGGACGAAGGTGTATGCTGAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACAATTTCTGATCATAACGGAATTCTTTTCACAACTAGAAAGCATCCCAAGACAAAGGATCTAATGCCAGAAGATTTTTGGATCAATGCATCAAAGAAAGGAATTTTGGTCTTTGCATTACCAGGGGAGCCAGGTCTGACAGAATTGGTTGGGGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACAATGATAGAGAACAGAAAAATTTTAGATGGCTCAGATCTTGATGATTTTGACAAGAGAAAGATCCCAGCTCCAGGGTTCCAGGTCGAAGTTGTGATGGTAGACTATGATGGCACGCTACCTGGAAAAGTCAACCCTGCAAGCAAAGGATCTGACATAAGAAATGTCTCATCTGGTGCAAAGCCAACATCTAGTTCAAGAAAGAGTAAGATACCTAAAAATGGAGATGATGATGTATTCTCAGATAGCGATGAAGAGGAGACCAAGGGAACACAAAGGAGGGAAGCTGCAACTGATTACAAATATATGGAACCTCATCAAGCATCTGAGGCCACTACTGACCATGTAGGGATGTTGTCGCGTGCAACGGATCAGTTGTCACTCCAGCAGCATGACGAACGCACGGAAAACAATGTTTCTGAAGCATCAACTACCAATAAACATCATAATATTCATGCAGGTCCTAACACCACCAACATGGAATCTATAGGGACAAGTGAATTCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTCAGAGGAGGCGAGTTAA 1779 0.4188 MEPAPPSSKTEPYSAKVPAENDNARDSPSLSPVSSISSWARNLRFGAADQNSQTENNGMSAFARLTSGIGLRSPPNELATSSSGAEQPNIIESFTKGLVDSSKEAVKAVQTKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIQLIASFCRSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLYLKFFPTAEEAIDSFNQKRCVDGKALTLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTRKHPKTKDLMPEDFWINASKKGILVFALPGEPGLTELVGDFKIHFHDRQGDFYCWMNTTMIENRKILDGSDLDDFDKRKIPAPGFQVEVVMVDYDGTLPGKVNPASKGSDIRNVSSGAKPTSSSRKSKIPKNGDDDVFSDSDEEETKGTQRREAATDYKYMEPHQASEATTDHVGMLSRATDQLSLQQHDERTENNVSEASTTNKHHNIHAGPNTTNMESIGTSEFKAIAADASVFSFGDEDFESDSEEAS* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0613 592 ProSiteProfiles C2 tensin-type domain profile. 308 435 IPR014020 -
Mtr5g0613 592 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 5 587 - -
Mtr5g0613 592 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 135 301 IPR029021 -
Mtr5g0613 592 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 236 275 IPR000387 GO:0016311|GO:0016791
Mtr5g0613 592 MobiDBLite consensus disorder prediction 484 500 - -
Mtr5g0613 592 Gene3D Protein tyrosine phosphatase superfamily 107 304 IPR029021 -
Mtr5g0613 592 MobiDBLite consensus disorder prediction 1 35 - -
Mtr5g0613 592 CDD PTP_PTEN 132 296 IPR045101 GO:0016791
Mtr5g0613 592 ProSiteProfiles Phosphatase tensin-type domain profile. 122 301 IPR029023 -
Mtr5g0613 592 MobiDBLite consensus disorder prediction 538 560 - -
Mtr5g0613 592 ProSitePatterns Tyrosine specific protein phosphatases active site. 238 248 IPR016130 GO:0016311|GO:0016791
Mtr5g0613 592 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 5 587 - -
Mtr5g0613 592 SMART PTEN_C2_2 306 434 IPR014020 -
Mtr5g0613 592 MobiDBLite consensus disorder prediction 449 468 - -
Mtr5g0613 592 MobiDBLite consensus disorder prediction 442 514 - -
Mtr5g0613 592 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 378 432 IPR035892 -
Mtr5g0613 592 MobiDBLite consensus disorder prediction 527 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0613 Mtr-Chr5 5948875 5955281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0613 21 587 Protein tyrosine phosphatase (PTP) family AT3G19420 61.993 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0613 K01110 - gmx:100801622 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0613 5 5948875 5955281 Mtr5g0613 5 5948875 5955281 ECH
Mtr5g0613 5 5948875 5955281 Mtr1g4100 1 52544645 52551454 PCT