Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0609 ATGAACAACACAGTAATTAACAGAAAAGAAATGGATCGGATCAAAGGTCCATGGAGTCCAGAAGAAGATGAAGCACTTCAAAAGCTTGTAGAGAAGCACGGGCCGAGAAACTGGTCGATTATAAGCAAATCGATACCAGGCCGGTCTGGGAAATCATGCAGGTTACGTTGGTGTAATCAGCTTTCACCACAAGTTGAGCATCGGGCTTTTACGCCTGAAGAGGATGATACTATAATCAGAGCCCATGCTCGATTTGGAAACAAATGGGCTACAATAGCCAGGCTTTTATCGGGCCGAACTGATAACGCTATTAAGAATCATTGGAACTCTACTTTGAAACGTAAGTGTTCTTCTATTATGATTGATGATTCTGAATCTCCACCGTTGAAAAGATCTGTTAGTGCTGGTGCTGCTATTCCCGTTTCTACTGGTCTTTATATTAACGCCAATTCTCCTGGTTCTCCTTCTGGATCCGATGTAAGCGAGTCCAGCGTACCTATTGTGAACACTCATGTAAACTCTCATGTTTACCGACCCGTGCCAACGAGAACCGTCGCGCCTCTACCACTCGTAGAAACGACGTCGCCTTCGAATTCGAATGATCCTCCAACTTCGTTATCACTTTCACTTCCCGGTGTTGGTGTTGATTCTTCTTCTGAAGATTCAAACCGTGTAACTGAGCCTGTCAACACTGCACCACCACCTCCTCCGCCACCACCGCCAAGCGCGATCCCTTTGATGCCGGTAATGACCACGGCTGTACCTGTTCCGATGGCGGTTCCGATGCAACAATCGGGATCGGTGATGCCGTTTAGTTTTAGTGCGGAGTTGTTGAGTGTGATGCAGGAGATGATTAGAACAGAGGTGAGAAGTTACATGGCGGGATTGGAGCAACAGAATGGGATGTGTTTTCAAAAAGCTGAGGATGGAATTAGGAATGCTTTGGTGAAGCGAATTGGGATTAGCAGAATCGATTCGTAA 981 0.4618 MNNTVINRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDDSESPPLKRSVSAGAAIPVSTGLYINANSPGSPSGSDVSESSVPIVNTHVNSHVYRPVPTRTVAPLPLVETTSPSNSNDPPTSLSLSLPGVGVDSSSEDSNRVTEPVNTAPPPPPPPPPSAIPLMPVMTTAVPVPMAVPMQQSGSVMPFSFSAELLSVMQEMIRTEVRSYMAGLEQQNGMCFQKAEDGIRNALVKRIGISRIDS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0609 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Mtr5g0609 326 CDD SANT 69 112 IPR001005 -
Mtr5g0609 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr5g0609 326 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Mtr5g0609 326 PANTHER MYB PROTEIN-RELATED 7 294 - -
Mtr5g0609 326 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr5g0609 326 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Mtr5g0609 326 Gene3D - 68 132 - -
Mtr5g0609 326 Gene3D - 14 66 - -
Mtr5g0609 326 MobiDBLite consensus disorder prediction 190 228 - -
Mtr5g0609 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Mtr5g0609 326 MobiDBLite consensus disorder prediction 190 242 - -
Mtr5g0609 326 CDD SANT 17 59 IPR001005 -
Mtr5g0609 326 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mtr5g0609 326 SMART sant 14 63 IPR001005 -
Mtr5g0609 326 SMART sant 66 114 IPR001005 -
Mtr5g0609 326 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 7 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0609 Mtr-Chr5 5930846 5932411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0609 8 325 MYB Transcription Factor Family AT4G37260 51.014 3.21e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g0609 Myb_DNA-binding 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0609 K09422 - gmx:780556 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0609 5 5930846 5932411 Mtr4g3398 4 47393302 47394505 ECH
Mtr5g0609 5 5930846 5932411 Mtr5g0609 5 5930846 5932411 ECH
Mtr4g3398 4 47393302 47394505 Mtr5g0609 5 5930846 5932411 PCT