LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g0599	ATGTCTCACCAACAACCTCTGTTAGAACAACAAGAAGAAGAAGGAGAAGAAACGGCTTACGATTCATCTGAAAAGGTTGTTGTTGTTGGAACCGACGAAGAAGAAGCCTATGAAGCCGAGGTGGACTCAGGAGTACGAATTCCACCGTTTTCATGGAAGAAACTCTGGTTATTCAGTGGACCAGGTTTTCTAATGAGTATAGCATTTTTGGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGGTATTCATTGTTATGGCTTCTTATGTGGGCTACTGCTATGGGGCTTTTGATTCAGCTTTTGTCAGCAAGGTTAGGTGTTGCTACGGGAAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCTAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTTTAATTGGTTCTGATATTCAAGAGGTTATTGGTAGTGCCATTGCTATTAGGATTTTGAGTAATGGCCTTGTTCCTCTTTGGGCTGGTGTTGTCATTACTGCTTTAGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCTTTTTTTGCTGTTCTGATAGCTATTATGGCTCTCTCATTTGCTTGGATGTTTGGTGAAGCAAAGCCAGATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCCAGGCAGGTTGACCCCAAAAAGAAAGGCCGCGTTCAAGAAGCTCTCAATTACTACTCCATAGAGTCCACCATTGCACTTGTTGTTTCCTTTATTATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGGATCGGTCTCGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGAGGCGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTATTAGCAGCTGGTCAAAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACTCGGAGTTTCGCAATCGTCCCGACTATGATAGTTGCACTTATATTTGATTCTTCAGAGGAATCATTAGATGTTTTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATCCCTTTCGCATTGATTCCCTTGCTTTGTTTGGTTTCAAAGGAACGAATAATGGGCACTTTCAAGATTGGCTCTGTCCTCAAGACTGTTTCCTGGCTTGTGGCTGCTCTAGTGATAGTGATAAATGGCTATCTTTTGCTGGAGTTCTTTTCCTCTGAAGTGAGTGGAGCAGTGTTCACCACTGTTGTGTGCGCAATAACAGCAGCATACGTTGCATTCATAATTTACCTTATATCAAGCTCCATTACATTTTCACCTTGGCAAAGTTTAACTCGATCAAAGACAGTTACCACCACGGAGAGTTGA	1545	0.4097	MSHQQPLLEQQEEEGEETAYDSSEKVVVVGTDEEEAYEAEVDSGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFIINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDSSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKERIMGTFKIGSVLKTVSWLVAALVIVINGYLLLEFFSSEVSGAVFTTVVCAITAAYVAFIIYLISSSITFSPWQSLTRSKTVTTTES*	515

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g0599	514	PRINTS	Natural resistance-associated macrophage protein signature	134	160	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PRINTS	Natural resistance-associated macrophage protein signature	164	183	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PRINTS	Natural resistance-associated macrophage protein signature	189	210	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PRINTS	Natural resistance-associated macrophage protein signature	238	261	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PRINTS	Natural resistance-associated macrophage protein signature	345	364	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PRINTS	Natural resistance-associated macrophage protein signature	373	390	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PRINTS	Natural resistance-associated macrophage protein signature	407	426	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	9	514	-	-
	Mtr5g0599	514	Hamap	Divalent metal cation transporter MntH [mntH].	41	463	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	9	514	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	Pfam	Natural resistance-associated macrophage protein	76	437	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Mtr5g0599	514	MobiDBLite	consensus disorder prediction	1	23	-	-
	Mtr5g0599	514	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	53	431	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g0599	Mtr-Chr5	5809076	5813264	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g0599	25	500	Inorganic Solute Cotransporters	AT2G23150	81.723	0.0	803

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g0599	K21398		-	gmx:100807811	889.026

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr5g0599	5	5809076	5813264	Mtr5g0599	5	5809076	5813264	ECH
	Mtr5g0599	5	5809076	5813264	Mtr4g3413	4	47603045	47606627	PCT