Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0580 ATGAACAAAAATCAAATCCCTGTAGTTATTAGTCCTTGTTCAGAATTTCCCACACCTAATAATCCTCTACTACACTTTAACAATGCTAATTGCATGGAGCAGTTACTCATTCACTGTGCCAATGCAATAGAAAGCAACAATGCAACACTAGCACAACAAATCCTTTGGGTCCTTAACAACACAACACCCTCGGACGACGACTCTAATCAACGCCTAGCAGGAAGCTTCATTCGAGCTCTTACAACGCGCGCAACAAGATCCTGTAGTTGCAATATTCCAGAAGCAGTTACACGAACTGCAAATAGTTATAACTATCATCACAATCTCGCCATACAAACACACAAGTTTTCAGTCATCGAGTTGGCAAATTTTATCGATTTAACGCCTTGGCATCGTTTTGGTTACACAGCAGCTAATTCTGCAATTCTAGAAGCTACTAAAGGATTTACAGTTATTCACATTGTCAATTTGAGTTTAACACATTGCATGCAGATTCCTACACTAATCGACGCCATTGCAAATCATCACGAGGTTCCTCCTTTAATCAAGCTAACAGTTGCAGTTAATAACTGTAGGAATAAGAATATTAATCATATTCCAATTCCACCAATGCTTGATCTTTCTTACGATGAATTAGGTTCAAAATTGGTTAATTTTGCTAAAACAAGAAACGTGATTATGGAATTCAAAGCTGTTTCTTCAACTTATTCAGATGGATTCGCTTCATTGATTGAACACCTACGAGTGCAAGTGCAACATTATAATAAATCTCATGAAGCATTGGTTATAAACTGTCACATGATGCTTCATTATATTCCTGACGAAACTCTATTTACAATAAATGATACAAATTCAAATATGAATTTGAATTTGAACTCTTGCTCATCGTTGCGCTCGTTGTTTCTAGAAGCAGTACGGAGTTTAGATCCAACAATTGTCGTGGTGGTGGATGAAGATGCGGATTTAACATCAAGTAGTTTGGTTAGTAGACTAAAATCCGCGTTTAATTATTTTTGGATACCGTTTGACACGGTGGACACATTTTTACCACGAGGGAGTAAACAAAGGCAGTGGTGCGAAGCTGAAATTTGTTGGAAGGTTGAGAATGTGATAGCATATGAAGGGATTCAAAGAGTCGAGAGAGTCGAGTCTAAAACCAAGTGGGAGAAACGAATGAGAAATGCACGTTTTCAAGGGGTTTGTTTCAGTGAGGATTCGGTTTTGGAGGTTAAGGCCATGCTTGATGAGCATGCAGTTGGATGGGGATTGAAGAAAGAAGACGAGTTTCTTGTGCTTACTTGGAAAGGGCATAATGTTATATTTGCTTCTGCTTGGTTACCTTCTTGA 1347 0.3831 MNKNQIPVVISPCSEFPTPNNPLLHFNNANCMEQLLIHCANAIESNNATLAQQILWVLNNTTPSDDDSNQRLAGSFIRALTTRATRSCSCNIPEAVTRTANSYNYHHNLAIQTHKFSVIELANFIDLTPWHRFGYTAANSAILEATKGFTVIHIVNLSLTHCMQIPTLIDAIANHHEVPPLIKLTVAVNNCRNKNINHIPIPPMLDLSYDELGSKLVNFAKTRNVIMEFKAVSSTYSDGFASLIEHLRVQVQHYNKSHEALVINCHMMLHYIPDETLFTINDTNSNMNLNLNSCSSLRSLFLEAVRSLDPTIVVVVDEDADLTSSSLVSRLKSAFNYFWIPFDTVDTFLPRGSKQRQWCEAEICWKVENVIAYEGIQRVERVESKTKWEKRMRNARFQGVCFSEDSVLEVKAMLDEHAVGWGLKKEDEFLVLTWKGHNVIFASAWLPS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0580 448 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 446 IPR005202 -
Mtr5g0580 448 PANTHER SCARECROW-LIKE PROTEIN 32 13 446 - -
Mtr5g0580 448 ProSiteProfiles GRAS family profile. 23 446 IPR005202 -
Mtr5g0580 448 Pfam GRAS domain family 32 445 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0580 Mtr-Chr5 5624161 5625523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0580 14 447 GRAS Transcription Factor Family AT3G49950 56.751 1.87e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr5g0580 GRAS 1.6e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0580 - - mtr:MTR_3g053270 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0580 5 5624161 5625523 Mtr5g0580 5 5624161 5625523 ECH