Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0579 ATGAGTTGCAACGGTTGCCGTGTCCTTAGAAAGGGTTGTAGTGAGTCATGTATCTTACGCCCTTGTATTCAATGGATCGATACCCCTGAAGCTCAAGGTCATGCCACTGTCTTTGTAGCCAAATTTTTCGGCCGTGCTGACCTTATGTCTTTCATTTCCAACGTCCCTCTACCACAAAGACCTGCTTTGTTTCAATCTTTGTTGTTTGAAGCGTGTGGAAGAACCGTGAACCCCGTTAACGGTGCTGTCGGACTTTTGTGGACAGGAAACTGGCACGTGTGTCAAGCAGCGGTTGAAACGGTGCTTCGTGGCGGAACCCTTAAACCCTTACCGGAGTTTCTCGGTTTAGATGCTCTTGCCTCCACCGTTGATGACTCGTCTGAAGGTGAAGTCACGTGCAACGACGCGCGGAAGATCCGAGATCCGAACCCGAAAGTCCGGTTCATGAGTTCTGGTGGTAAACGCAAGCGATCAGGCGGTGAAGTTTTGAAGCTTCCGGCGACGACTGATCTTAATCTCCGGTTGACGCCGCAGAGCACGTTGACCAACGGATGCCGGAAGGAAATTCGCCGTCCGGGAACACCGTCGATGAATTCTGAGGAATCTGTGACGACGGTGACGTGCTTGGAAAGTGGGATCGGAGAAGATAATTACGTTCACGACGGAGACCGCAAAGTTCTCAACCTTTTTGTTTGA 696 0.5072 MSCNGCRVLRKGCSESCILRPCIQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPLPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPLPEFLGLDALASTVDDSSEGEVTCNDARKIRDPNPKVRFMSSGGKRKRSGGEVLKLPATTDLNLRLTPQSTLTNGCRKEIRRPGTPSMNSEESVTTVTCLESGIGEDNYVHDGDRKVLNLFV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0579 231 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Mtr5g0579 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 231 - -
Mtr5g0579 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 231 - -
Mtr5g0579 231 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0579 Mtr-Chr5 5594773 5596115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0579 1 231 AS2 family AT4G37540 55.691 4.55e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g0579 LOB 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0579 - - gmx:100816189 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0579 5 5594773 5596115 Mtr4g3430 4 47802594 47803850 ECH
Mtr5g0579 5 5594773 5596115 Mtr5g0579 5 5594773 5596115 ECH
Mtr5g0579 5 5594773 5596115 Mtr1g4035 1 51964287 51965218 PCT
Mtr4g3430 4 47802594 47803850 Mtr5g0579 5 5594773 5596115 PCT