Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0575 ATGGCCATTAGGCCATTCCAATCCACACTATCGCTCCAACGATTCTTCTCTATTTTCCGAACTCATCATTCAATCTCCTCCTCCGCCACCACCACCACCACCAACTTTCTACCACCCTTTTCCGTCCTCCGTTGCTTCGCAACTTCGTTCTCACAACCTCGCCGCCCCCAATATCCTCCTCCGCCGCCGCGGCCCGACACTCTGGCTCAACGAATCGGAAAATCCATTCGCCGCCCCGGCGCTTCCTCTAAGGCCAGAATTTACGCTGATGTCAATGTTGTTCGACCTAAGGAATATTGGGATTATGAATCTCTTGCTGTTCAGTGGGGGGAACAAGATGATTACCAGGTCTTGAAGAAGGTTGGAAGAGGGAAATACAGTGAAGTGTTTGAGGGTGTTCACTGTGGGAATGATGAAAAATGTATCATCAAGATACTCAAACCTGTCAGGAAGAAGAAGATAAAGAGGGAGATCAAGATATTGCAAAATCTCTGTGGAGGACCCAATATTGTAAAGTTGCTTGACATTGTTAGGGACCAGCAATCAAAGACCCCAAGCCTTGTATTTGAATGTGTTAATAACACCGATTTTAAAGTGCTCTATCCTACATTGTCTGACTATGATATACGATATTATATCTATGAACTTTTAAAGGCATTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTAAAGCCACATAATATTATGATTGACCATGCGCAGCGTAAGCTTTGCCTGATAGACTGGGGACTTGCAGAGTTTTATCATCCCGGGCAAGAGTATAATGTCCGTGTTGCCTCAAGATATTTCAAAGGTCCTGAGCTACTTATTGATCTTCAAGACTATGATTACTCACTTGATTTATGGTCTCTTGGTTGTATGTTTGCTGGAATGATATTCCGGAAGGAGCCATTCTTTTATGGACAAGATAACTATGATCAACTAGTAAAAATAGCCAAGGTACTTGGAACAGATGAATTACGTGCGTATCAGGACAAGTATCACATAGAGTTGGACCCACGTTATGCAGTGCTTATTGGGAGGCATGACCGGAAGCCATGGACAAAGTTCATTAATATGGATAACCGACACTTGGCTGTTCCTGAGGCTATTGACTTTCTGGACAAGTTACTACAATATGATCACCAAGAACGGCTCACTGCAAAAGAAGCTATGGCCCACCCCTACTTCAGTCCAGTGAGAAATGCAGAAAGCAGTAAAACTCGCACACATTGA 1245 0.4386 MAIRPFQSTLSLQRFFSIFRTHHSISSSATTTTTNFLPPFSVLRCFATSFSQPRRPQYPPPPPRPDTLAQRIGKSIRRPGASSKARIYADVNVVRPKEYWDYESLAVQWGEQDDYQVLKKVGRGKYSEVFEGVHCGNDEKCIIKILKPVRKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLVFECVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNIMIDHAQRKLCLIDWGLAEFYHPGQEYNVRVASRYFKGPELLIDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGQDNYDQLVKIAKVLGTDELRAYQDKYHIELDPRYAVLIGRHDRKPWTKFINMDNRHLAVPEAIDFLDKLLQYDHQERLTAKEAMAHPYFSPVRNAESSKTRTH* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0575 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Mtr5g0575 414 SUPERFAMILY Protein kinase-like (PK-like) 87 404 IPR011009 -
Mtr5g0575 414 SMART serkin_6 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0575 414 Pfam Protein kinase domain 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0575 414 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Mtr5g0575 414 Gene3D Phosphorylase Kinase; domain 1 115 191 - -
Mtr5g0575 414 CDD STKc_CK2_alpha 96 400 IPR045216 GO:0004674|GO:0006468
Mtr5g0575 414 PANTHER CASEIN KINASE II SUBUNIT ALPHA 23 406 IPR045216 GO:0004674|GO:0006468
Mtr5g0575 414 PANTHER BNAA04G13490D PROTEIN 23 406 - -
Mtr5g0575 414 ProSiteProfiles Protein kinase domain profile. 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0575 414 ProSitePatterns Protein kinases ATP-binding region signature. 121 144 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0575 Mtr-Chr5 5559625 5566395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0575 113 400 Core Cell Cycle Gene Families AT1G76540 30.671 2.54e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Mtr5g0575 Pkinase 4.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0575 K03097 - cit:102608753 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0575 5 5559625 5566395 Mtr5g0575 5 5559625 5566395 ECH