Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0569 ATGGCTAACATGGATGGAAAATCACTCCGGAATGCTAAGAAATTCATTCCGATACCACCTCCTTCGCCTCGATCAGCAGCAACCGGTTATCCTTGCGAGTATGCGGCGATGAATAATTTATCACCGAGAGGGCGAAGCAGCTGTGTCTCTTCTGCAACAAGAGATCTGTGGGAGCGTCTTTTCAATGAAGGGTATAAAGCCGATGTTTGCATTAATACTGATAACGGTGGCATTATTTATGCTCATTCTAACATTATTGCGGTGGCTTCTCCTGTATTGAAAGGCATGCTGAAGCAAGCAAATCGTTCCAATCGGTGGCGATCGATCTCAATCTTTGGGGTTCCACATGATGCAGTACGAGTTTTTATTCGATATTTGTACTCTTCCTGTTACGAGAAAGAAGAAATGAAGGAATTTGTCCTACATTTGTTGGTGCTGTCTCATGTATATGCGGTCCCTCACTTGAAACGAGAATGTGAACAGAAGCTAGAATTGGGTTTACTCACAATGGATAATCTAGTTGATGTATTTCAACTTGCATTACTGTGTGATGCTCCGCGGCTCAGTCTCATTTGTCACCGTAAAATACTAAAAAACTTCAGAACTGTTTCGGAGTCAGAAGGATGGAAAGCAATGAAGCAGAGTCACCCGGTTCTAGAAAAGGAAATTCTGGAATCAATGATTGATGAAGAAAATAGTAAGAAGGAGAGGATCAGAAAAATGAATGAAAGAGAGGTCTATTTGCAATTATATGATGCAATGGAAGCTCTTGTTCATATATGTAGAGATGGTTGTCGAACTATTGGCCCGCATGATAAAGACTTCAAAGCAAACCAGCCGTGTAGGTATACATCCTGCAAAGGGCTAGAATTGCTTGTTCGTCATTTTGCTGGTTGCAAATTGAGAGTCCCGGGGGGTTGTGGTCATTGCAAAAGGATGTGGCAACTGTTGGAGCTGCATTCTCGACTGTGTGCTGATCCGGATTTCTGTAGAGTTCCTTTGTGCAGGAACTTTAAGCAGAGAATATCAAAACAAAGCAAGAAAGACGAAATTAGATGGACAATTTTGGTTGAAAAGATCTTGAAAACAAGAGGAATTGGGATTGCACCATGCTTTCGGCCACAATGA 1128 0.4193 MANMDGKSLRNAKKFIPIPPPSPRSAATGYPCEYAAMNNLSPRGRSSCVSSATRDLWERLFNEGYKADVCINTDNGGIIYAHSNIIAVASPVLKGMLKQANRSNRWRSISIFGVPHDAVRVFIRYLYSSCYEKEEMKEFVLHLLVLSHVYAVPHLKRECEQKLELGLLTMDNLVDVFQLALLCDAPRLSLICHRKILKNFRTVSESEGWKAMKQSHPVLEKEILESMIDEENSKKERIRKMNEREVYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQPCRYTSCKGLELLVRHFAGCKLRVPGGCGHCKRMWQLLELHSRLCADPDFCRVPLCRNFKQRISKQSKKDEIRWTILVEKILKTRGIGIAPCFRPQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0569 375 ProSiteProfiles Zinc finger TAZ-type profile. 241 338 IPR000197 -
Mtr5g0569 375 Gene3D TAZ domain 242 363 IPR035898 -
Mtr5g0569 375 SMART BTB_4 67 167 IPR000210 GO:0005515
Mtr5g0569 375 CDD BACK 171 226 - -
Mtr5g0569 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 9 373 IPR044513 -
Mtr5g0569 375 Pfam TAZ zinc finger 252 335 IPR000197 -
Mtr5g0569 375 Gene3D - 168 241 - -
Mtr5g0569 375 SMART TAZ_2 244 336 IPR000197 -
Mtr5g0569 375 Coils Coil 221 244 - -
Mtr5g0569 375 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 9 373 - -
Mtr5g0569 375 ProSiteProfiles BTB domain profile. 67 135 IPR000210 GO:0005515
Mtr5g0569 375 SUPERFAMILY POZ domain 47 163 IPR011333 -
Mtr5g0569 375 Pfam BTB/POZ domain 59 163 IPR000210 GO:0005515
Mtr5g0569 375 SUPERFAMILY TAZ domain 244 344 IPR035898 -
Mtr5g0569 375 Gene3D Potassium Channel Kv1.1; Chain A 43 167 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0569 Mtr-Chr5 5488821 5493922 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Mtr5g0569 BTB 4.8e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0569 - - lja:Lj2g3v1968190.1 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0569 5 5488821 5493922 Mtr5g0569 5 5488821 5493922 ECH