Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0560 ATGGGGAAGAAGCAGCACAGCAAAGACCGAATGTTCTTAACCAAAACTGAGTGGGCAACGGAATGGGGTGGTTACAAATCCAAAGAAAATCGCACCGTTTTCAAACGTCTTCCTTTTTATTGCTGCGCACTTACTTTTACTCCGTTTGAGTTTCCAGTTTGCACACCTGATGGTAGCGTCTTCGATGTTATGAACATAACTCCATATATTATAAAATATGGCAAACACCCTGTTACTGGAGCTCCCCTAAAGCAGCAAGATCTCATTCCACTAACTTTTCACAAGAACTCAGAAGGAGAATATCACTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACTCACATTGTGGCAGTCAAAACTACTGGAAATGTCTTCTGCTATGAGGCTGTTAAAGAGTTAAACATCAAGACAAAAAACTGGAAGGAGCTCCTCACCGACGAGGCATTTACTAGGGATGACCTTGTAACAATTCAGAATCCTAATGCACTTGACCAGAAGGTTCTTCTGGATTTTGATCATGTTAAACAAAATTTGAAAATTGACGATGAAGAACTACAGAAAATGAGTTCAGATCCAGCCTATAACATAAACATGTCGGGAGATATCAAACAAATGCTTAAAGAGCTTGGAACTGAGCAAGGAAAGGAAACTGCATTGCATGGGGGAGGTGGTGGAAAGGCACAAAAAGAAAGGGCCGCTGCACTCGCTGCCATCTTAGCTGCACGGTCACAAGTTAAAGAAGATTCCAAATCGGCCGATGGAGCTCCTCAGGCACTCAGTATTGTAGATGCTGCATCTGCCGCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCATCAAGTGATAAAACTGCTGCCAGAATAGCTATGCACGTGGCTGGTGACAGGGCACCGGTGAATGCAAAGATGGTTAAAAGTCGTTACACTACTGGCGCTGCTTCCCGGTCTTTTACTTCTACATCATATGATCCAGTTACAAAAAATGATTATGAATATGTGAAAGTTGAGAAGAATCCAAAGAAGAAGGGATATGTACAATTGCATACAACACACGGTGATTTGAACATTGAGCTGCACTGTGATATAGCGCCCAGGGCATGCGAGAACTTCATCACGCTTTGTGAACGCGGATATTATAACGGAGTTGCTTTTCATAGAAGCATTAGGAATTTTATGATACAAGGTGGTGATCCTACTGGTACTGGTAGAGGTGGTGAATCAATTTGGGGAAAGCCTTTTAAGGATGAACTTAACTCCAAATTAGTCCACTCTGGAAGGGGTGTGGTTAGCATGGCAAATAGTGGCCCACATACTAATGGTTCCCAGTTTTTCATATTGTACAAATCTGCAAATCATTTAAACTTCAAACATACAGTTTTTGGAGGTGTGGTTGGTGGATTGACTACACTAGCAACAATGGAAAAGGTTCCTGTTGATGACAGTGACCGACCTCTGGAGGAAATCAAGATAACAGGTGTTACAACTTTTGTCAATCCTTACACCGAGCCAGATGAGGAAGAAGAGCAAGCTAATGCCAAAGAGAAGAATGCAAATGATGAAGAAAATGACAAGGTTGGCTCATGGTATAGTAATCCTGGAGCTGGAACATCTGAATCTGGAGGTACAGGTGTTGGCGGTGGTGTTGGCAAATACTTGAAAGCTAGGAATGCTCCGCCGGCTGAACCTGCTGCTGTCGACACTGGTACAGCCGTTGTGGGAAAGAAGAGAAAAGCAGTTGTCAGTGGTGAATTTAAAGATTTTTCTGGATGGTAG 1779 0.4278 MGKKQHSKDRMFLTKTEWATEWGGYKSKENRTVFKRLPFYCCALTFTPFEFPVCTPDGSVFDVMNITPYIIKYGKHPVTGAPLKQQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEAFTRDDLVTIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPAYNINMSGDIKQMLKELGTEQGKETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSADGAPQALSIVDAASAAVHGRSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDYEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLATMEKVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQANAKEKNANDEENDKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAPPAEPAAVDTGTAVVGKKRKAVVSGEFKDFSGW* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0560 592 CDD cyclophilin_RING 346 504 - -
Mtr5g0560 592 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Mtr5g0560 592 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 381 398 IPR020892 GO:0003755|GO:0006457
Mtr5g0560 592 SUPERFAMILY RING/U-box 37 105 - -
Mtr5g0560 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 360 375 IPR002130 GO:0000413|GO:0003755
Mtr5g0560 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 386 398 IPR002130 GO:0000413|GO:0003755
Mtr5g0560 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 429 444 IPR002130 GO:0000413|GO:0003755
Mtr5g0560 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 444 456 IPR002130 GO:0000413|GO:0003755
Mtr5g0560 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 457 472 IPR002130 GO:0000413|GO:0003755
Mtr5g0560 592 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 590 IPR044666 -
Mtr5g0560 592 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 590 - -
Mtr5g0560 592 MobiDBLite consensus disorder prediction 501 574 - -
Mtr5g0560 592 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Mtr5g0560 592 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Mtr5g0560 592 MobiDBLite consensus disorder prediction 508 524 - -
Mtr5g0560 592 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 350 497 IPR002130 GO:0000413|GO:0003755
Mtr5g0560 592 SUPERFAMILY Cyclophilin-like 346 506 IPR029000 -
Mtr5g0560 592 Gene3D - 326 511 IPR029000 -
Mtr5g0560 592 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 346 496 IPR002130 GO:0000413|GO:0003755
Mtr5g0560 592 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Mtr5g0560 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Mtr5g0560 592 MobiDBLite consensus disorder prediction 525 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0560 Mtr-Chr5 5376885 5389771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0560 1 592 U-box Gene Family AT5G67530 76.254 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0560 K10598 - gmx:100819923 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0560 5 5376885 5389771 Mtr5g0560 5 5376885 5389771 ECH