Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0559 ATGGATACATTGTTTAGACTTGTCAGTTTTCAACCACACCAACAACAAGAAGATCAATCTCTCAACTCCACCACCAGCAGAACAACAACATCAAGTAGCTCTCGATCCTCAAAACAAAACTATCACCAATATTACAATCCACAAGAAGTTGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTTTCCTCATCTTCTTCCAAACACTACTATCCTTATAATCAACCTCAAACCTCAAATACTATTACTACAAACACCCCCACAACATCACTCACACCCCCTCCACCAACAGCTGATTTCACCTTCGAATTAACCGGAAGGTGGGCCAACAACATCCTCCTCGAAACAGCACGAGCCATAGCAGAAAAAAACAGCACTCGTTTACAACAACTCATGTGGATGCTTAACGAACTAAGCTCCCCTTATGGTGACATAGAACAAAAACTAGCTGCATATTTTCTCCAAGCCTTATTCTCTCGAATGACCGAAGCCGGTACCCGAACCTTCCGAACCCTAGCTTCAGCATCAGAAAAAACTTGCTCTTTCGAATCAACAAGAAAAACGGTTCTAAAATTCCAAGAAGTTAGTCCGTGGACAACCTTCGGCCATGTCGCATGCAATGGCGCCATTTTAGAAGCCTTCGAAGGTGATTCCAAGCTGCACATAATTGATATTAGTAACACTTATTGCACTCAGTGGCCAACTCTTTTTGAAGCGTTGGCCACTCGTGCTGACGATACTCCTCACCTCCGTCTAACTACCATCGTCACTGCTGGTGGTTCTGTTCAAAAAGTTATGAAGGAAATTGGTGCTAGAATGGAAAAATTCGCTAGACTCATGGGAGTTCCATTTAAATTCAACGTTATTCATCACTCCGGCGATCTTTCTGATTTGAATTTTTTGGATTTAGATATTAAAGAAGATGAAGCTTTAGCTGTTAATTGTGTTAATGCTTTGCATTCAGTAACAGTTGGCAATGGTAATGGTAACGGTAATAACCGTCGTGACTCGTTGATAGCTTCGTTGATCGCGTTGCGGCCTAGGATAGTAACAATGGTTGAAGAGGAGGCTGATTTAAATTTTGGTAATGAAGGATATGAATTTGTGAATGGTTTTGAAGAGTGTTTAAGGTGGTTTAGGGTTTACTTTGAAGCATTAGAAGAGAGTTTTCCGAAGACGAGTAACGAGCGTTTGATGCTTGAAAGGGAAGCAGGGAGAGGGATAGTTGATTTGGTGGCATGTGCTCCGGCGGAGTCGATTGAACGGAGAGAAACTGCGGTGAGGTGGTCACGGCGTTTGCATGGTCGAGGGTTTAATACGGTGGCGTTTAGTGAGGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGGAGGTATAAGGAAGGGTGGTCGATGATACGGTGTAATGATGCCGGAATATTCTTGACGTGGAAGGAACAACCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1476 0.4316 MDTLFRLVSFQPHQQQEDQSLNSTTSRTTTSSSSRSSKQNYHQYYNPQEVEEECFNFFMDEEDLSSSSSKHYYPYNQPQTSNTITTNTPTTSLTPPPPTADFTFELTGRWANNILLETARAIAEKNSTRLQQLMWMLNELSSPYGDIEQKLAAYFLQALFSRMTEAGTRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEAFEGDSKLHIIDISNTYCTQWPTLFEALATRADDTPHLRLTTIVTAGGSVQKVMKEIGARMEKFARLMGVPFKFNVIHHSGDLSDLNFLDLDIKEDEALAVNCVNALHSVTVGNGNGNGNNRRDSLIASLIALRPRIVTMVEEEADLNFGNEGYEFVNGFEECLRWFRVYFEALEESFPKTSNERLMLEREAGRGIVDLVACAPAESIERRETAVRWSRRLHGRGFNTVAFSEEVCDDVRALLRRYKEGWSMIRCNDAGIFLTWKEQPVVWASAWRP* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0559 491 MobiDBLite consensus disorder prediction 68 90 - -
Mtr5g0559 491 MobiDBLite consensus disorder prediction 8 41 - -
Mtr5g0559 491 MobiDBLite consensus disorder prediction 68 97 - -
Mtr5g0559 491 Pfam GRAS domain family 113 490 IPR005202 -
Mtr5g0559 491 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 490 IPR005202 -
Mtr5g0559 491 ProSiteProfiles GRAS family profile. 102 490 IPR005202 -
Mtr5g0559 491 PANTHER PROTEIN SHORT-ROOT 1 490 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0559 Mtr-Chr5 5370421 5372322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0559 1 491 GRAS Transcription Factor Family AT4G37650 58.101 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr5g0559 GRAS 3.5e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0559 - - gmx:100797072 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0559 5 5370421 5372322 Mtr5g0559 5 5370421 5372322 ECH
Mtr5g0559 5 5370421 5372322 Mtr4g3440 4 47917780 47919692 PCT