Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0554 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCTCTGAAAGCTGGAGTAGTCAAATACGGGGCTGGAAAATGGCGTACAATTCTTACAGACCCAGATTTCAGCACCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACTGCAATATGGGGATCCAGGCAGAAGGCAAAACTTGCACTTAAAAAGAGCCTACCACCCCCGAAAAATGAAAATAACCACCACCCGACCTCGACCGCCATAGTTCAATATAATCCAGAAGTTGCAGCTCCTAAGCCTCTTTCAGTTTCTGGTGGAATGTCTACTTCAAAAGAACAAATATCAAGAATTCTTTTTAATAATGACAGATTGGACAGCCTTATATTCGACTCGATTGTCAAGTTGAAGGAGCCAAAGGGTTCTGACATTGCCGCCATTGCTGCTTATATAGAGGATCAATACCGGTCTCCACCAAACCTCATAAAGTTACTGTCAACAAAACTGAAGCATATGGTGGCAAGCGGCAAATTAGTGAAGGTAAATCATAAGTACAGGATTGCAACAAATTCAACAAAAACATCCGAGAAAAGAAGATGCTCTTCCTTGTTACTCCTGGAAGGGAGGCCAAAAGATTCTCCAAAAGCAGAGAAAACTGATGCCAACGTCCTTTCAAAATCTCAAATTGATGTTGAGCTTTTAAAAATGAGGGGTGTGACAGCTCAAGAGGTAGCAGCAGCAGCTGCAAAAGCAGTTGCGGAGGCAGAAGCTGCCATTGCTGAGGCTGAGACAGCGGCAAGGGAGGCCGAGACAGCTGAAGCTGAAGCAGAGGCTGCACGTGTGTTTGCAAAAGCAGCAACGAAGGCACTAAAATGCAGAAGACTTAATATTTGA 903 0.4419 MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKSLPPPKNENNHHPTSTAIVQYNPEVAAPKPLSVSGGMSTSKEQISRILFNNDRLDSLIFDSIVKLKEPKGSDIAAIAAYIEDQYRSPPNLIKLLSTKLKHMVASGKLVKVNHKYRIATNSTKTSEKRRCSSLLLLEGRPKDSPKAEKTDANVLSKSQIDVELLKMRGVTAQEVAAAAAKAVAEAEAAIAEAETAAREAETAEAEAEAARVFAKAATKALKCRRLNI* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0554 300 PANTHER SINGLE MYB HISTONE 4 1 299 IPR044597 GO:0003691
Mtr5g0554 300 SUPERFAMILY "Winged helix" DNA-binding domain 127 200 IPR036390 -
Mtr5g0554 300 Coils Coil 248 282 - -
Mtr5g0554 300 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 299 - -
Mtr5g0554 300 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mtr5g0554 300 SMART h15plus2 100 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g0554 300 CDD SANT_TRF 6 57 - -
Mtr5g0554 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 124 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g0554 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mtr5g0554 300 Gene3D - 2 59 - -
Mtr5g0554 300 Gene3D - 124 203 IPR036388 -
Mtr5g0554 300 SMART sant 4 59 IPR001005 -
Mtr5g0554 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mtr5g0554 300 SUPERFAMILY Homeodomain-like 2 64 IPR009057 -
Mtr5g0554 300 Pfam linker histone H1 and H5 family 130 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0554 Mtr-Chr5 5308387 5315179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0554 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 52.667 4.23e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g0554 Linker_histone 2.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0554 K09422 - gmx:778165 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0554 5 5308387 5315179 Mtr4g3444 4 47947860 47953122 PCT