Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0547 ATGCCTATGTATCAGCCTTCTAAAAGGGATATGGTAGTTGGGTATGAGGGTGGTGGTGATGGTCAGATTCTAGATCTGGACACAGCTGTTAAAGATGGGGTTTTGGGTGGTGTTGATTGTGGTGGTATTGTAGGAACTGGTGTTGTTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGAGTTATGTGAAGTACCAAGTGTTTTCATTTGTCCAATTTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTATGAGAGGAACAACATTCTCAAATGGTTTAATATGGGACACTTTACTTGTCCTACAACTATGCAAGAGCTTTGGGATGATTCCATCACTCCAAACACAACACTTTATAGGTTGATATATACTTGGTTTTCTCAGAAGTATCTGTTGATGAAGAAGAGGTCCGAAGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTGAAGGGTCAAGCTAGAGTTCATGCTTTGAAGGAGCTTCATCAAGTTGTGTCTGTTCATGCTACTGCAAGGAAGTCTGTGATTGATGGAGGTGGTGTTTCTGTTTTATCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGTTCTGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCTAAGAAGAATCTTATGCAACCTGCTAAGATTTCTTTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACGCGGTTGATTGAAACGTTAATTGAAGAGAAAGATTTTCGTTCCGAGATTATCTCCAGCCATAGTTTATTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACATAGCAATGGAATCTGTCCTGGATTAAGCCTTCTCAGAACAGTGTGCTTCTATAAGGAAGTTAAGATTTTGTTAGTTAGCATTGGCGCTGTTTCTCAATTAGTTGAATTGTTGTCTGGTATGGACCATGATTGTTTGGAATTAGCCCTTTGTGTTTTGGATTCGTTATCGTCAATACCCGAAGGCAGGGTAGCTTTGAAGGAATGTGTTAACACAATCCCTATCATGGTGAGACTTTTGATGAGGATATCAGAAAGCTGTACTCAGTATGCATTGTCAATTTTGTGGTCTGTTTGCAAGCTCGCGCCCGAGGAGTGTTCGTCGATTGCCGTTGATGCAGGGCTTGCAGCTAAGCTCCTTCTTGTGATTCAAAGTGGTTGCAATCCAATATTGAAACAACAATCTGCTGAGCTTTTGAAACTATGTAGTTTGAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA 1356 0.3997 MPMYQPSKRDMVVGYEGGGDGQILDLDTAVKDGVLGGVDCGGIVGTGVVGEKLDLRKMIQELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNMGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHQVVSVHATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIETLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALKECVNTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0547 451 SUPERFAMILY ARM repeat 155 436 IPR016024 -
Mtr5g0547 451 SUPERFAMILY RING/U-box 62 137 - -
Mtr5g0547 451 PANTHER WDSAM1 PROTEIN 41 450 IPR045185 GO:0061630
Mtr5g0547 451 CDD RING-Ubox_PUB 71 113 IPR045210 -
Mtr5g0547 451 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 41 450 - -
Mtr5g0547 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 139 IPR013083 -
Mtr5g0547 451 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Mtr5g0547 451 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Mtr5g0547 451 Gene3D - 140 445 IPR011989 -
Mtr5g0547 451 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0547 Mtr-Chr5 5242087 5244725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0547 1 451 U-box Gene Family AT3G49810 74.279 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0547 - - gmx:100779827 776.548