Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0541 ATGAAGTTCATGGAAAATATTGAGGATACCTTTAACCTAAACAATCAAAATAGTAACATTTTTGGTTTATCTTTCTCTTCACAAATGAATATAGGTGCTCCTTCCACTGCTGCTGCTGAAGCTGTTCCAACAGGCTTTTATTATAACCCGACACCTCTTCATAACTATGGCTACTATGGACATGAAAGTGAACAAGTTGGATTGTATTCAGCCTTGCCCATCATGCATGATGGATCACAAGCACATGCAATGGGAATTTCTCATTATGGATGCAGTACCAAAGAAGAAATGCAACTAAGCATAGATAGTATTTTTGACAACCAAACTTCATACCATAAGCCAAACAATTCAAATAACCTAAATCATGTACAAGAGAATATGAGCTTGTTGGGGAGTTTGGTAGAGCACCAGAAGCAACAGCTCTCATGTTACACCGTCTTAAGAAACGACAATGTGATCTTAGACGGGCCGATGAAATATCAGCTAGAAGATAATGTCCAGCTACCAAATATAGTTGAGGACGAAATTTCTGATCTAAGGAGATGGGTATCAAGGGACTTTCATGCTGCAAGCCATGCACAAGACTCGAAGACATGTGTGCTGTCTGCAAGTTCTAGCTCACAATCGAGCTGTGTTACAAGTTCACAACAAACATCACCTATTGATTCTGCTTCCATTGATACGATGAAAAGGAAGCATCAAATGGTGAACTTGAAAAAGAATCAGAACCAAACCTTTGGGCAAAGAACATCTCAGTATAGAGGTGTAACAAGACATAGGTGGACAGGTAGATATGAAGCTCATCTATGGGATAACAGCTGTAAAAAAGAGGGCCAAGCTAGAAAAGGAAAGCAAGTTTATCTAGGTGGTTATGATATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACTCGTATAAATTTTCCATTGGAAAATTATCAAAAGGAACTTGAGGAAATGAAGAAAATGACTAGACTAGAATACGTTGCTCATTTAAGAAGGAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTATAGAGGAGTAACAAGACATCATCAACATGGAAGATGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACTTTCACTACACAAGAGGAAGCAGGTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGCAAATGCTGTTACTAATTTTGATATAACAAAATATGATGTGGAAAAAATTATTTCAAGCCCTAACCTTCTTAGCAGTAAAGAAGCTAGGAGAAACAAAAAAATGGATGATGTAATTAACAATAATAAACCAGCTTGTGCGTTTGAAGACATTGAAGAAGCCATTCCAATACAAAAAAGATGCAAAATCCAACCATTCTCAATAAGTAACATATATGATGAAGAAGTAGAGGAATCAAATAGAATGCATATGTCAAATCCTTCTTCAATTGTGACAAGTTTGAGCAGTTCAAGAGAAGAAAGCCCTGAAAACATGACAAGCTTACCAATGCTCTTTGGAATGACTTCAACAACATCAATAATGTCTTCATTTTCTTTGCCTCAGATGCCACTGTCTGTTTTTGCTGCGTGGACCGATGCATAA 1635 0.3798 MKFMENIEDTFNLNNQNSNIFGLSFSSQMNIGAPSTAAAEAVPTGFYYNPTPLHNYGYYGHESEQVGLYSALPIMHDGSQAHAMGISHYGCSTKEEMQLSIDSIFDNQTSYHKPNNSNNLNHVQENMSLLGSLVEHQKQQLSCYTVLRNDNVILDGPMKYQLEDNVQLPNIVEDEISDLRRWVSRDFHAASHAQDSKTCVLSASSSSQSSCVTSSQQTSPIDSASIDTMKRKHQMVNLKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRLEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGANAVTNFDITKYDVEKIISSPNLLSSKEARRNKKMDDVINNNKPACAFEDIEEAIPIQKRCKIQPFSISNIYDEEVEESNRMHMSNPSSIVTSLSSSREESPENMTSLPMLFGMTSTTSIMSSFSLPQMPLSVFAAWTDA* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0541 544 ProSiteProfiles AP2/ERF domain profile. 252 318 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 Pfam AP2 domain 252 310 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 Pfam AP2 domain 355 404 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 SMART rav1_2 252 324 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 SMART rav1_2 354 418 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 CDD AP2 353 414 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 CDD AP2 251 318 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 83 446 - -
Mtr5g0541 544 MobiDBLite consensus disorder prediction 486 508 - -
Mtr5g0541 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 83 446 - -
Mtr5g0541 544 MobiDBLite consensus disorder prediction 483 508 - -
Mtr5g0541 544 Gene3D AP2/ERF domain 251 320 IPR036955 GO:0003700|GO:0006355
Mtr5g0541 544 Gene3D AP2/ERF domain 354 414 IPR036955 GO:0003700|GO:0006355
Mtr5g0541 544 ProSiteProfiles AP2/ERF domain profile. 354 412 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 SUPERFAMILY DNA-binding domain 251 320 IPR016177 GO:0003677
Mtr5g0541 544 PRINTS Ethylene responsive element binding protein signature 253 264 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 PRINTS Ethylene responsive element binding protein signature 394 414 IPR001471 GO:0003700|GO:0006355
Mtr5g0541 544 SUPERFAMILY DNA-binding domain 353 413 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0541 Mtr-Chr5 5181691 5185326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0541 84 544 AP2-EREBP Transcription Factor Family AT4G37750 44.186 3.22e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr5g0541 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0541 K09285 - gmx:100792451 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0541 5 5181691 5185326 Mtr4g3461 4 48118258 48122168 PCT