Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0538 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAAAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGTCTTACATAGAACAAAATGGTACTGGTGGAAATTGGATTGCTCTACCTCAGAAGATAGGACTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGTTAAATTATCTTAGACCAAATATTAAACATGGTGGTTTCTCCGAAGAAGAAGACGACATTATTTGCAGCCTCTATGTTAGTATCGGAAGCAGGTGGTCTATCATAGCAGCACAATTACCAGGACGAACGGATAATGATATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTCCTTGGGAAACAAAGGAAGGAGCAACAAGCTCGCCGAGTTAGCAACATGAAACAAGAGATGAAAAGAGAAACAAATCAGAATTTGATGATGGCGGCTTTGGGTGTCAATAGTATGAGTTCAGCACCATATTGGCCTGCAGAGTATTCTGTTCATCCTATGCCAGTTTCAAATTCATCCATAATTGATTATGATACGAACAATCAAACATCCTTCACAAGTTTAATGAACATTCCAAACCCTTTTTCCATGGTGAGTAATACAATTACAAACAATGGTGGAAATTGCCAACCATCACATATATTTCAAGGGTTTGAAAATTTTCCAAGGGATTTAAGTGAGCTTGTATGTGTGAACCAACAGCAAATAATGGATAGAACAATTGATGGTTTTTATGACATGAGCAATGGTGGTAGCACAATCACAACAACTTCAACAGAAAGCACTAGTTGGGGAGATATGAACTCTTTGGTTTACTCACCTTTGGTTTCTGATTATGAAGGTTGTTGCCAACAAGGATCAATTCCACAAGATGCTATTGCTTTTGAGGAGTCTAGGTATTTTGCAATGCAAATGCAATAA 930 0.3871 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQARRVSNMKQEMKRETNQNLMMAALGVNSMSSAPYWPAEYSVHPMPVSNSSIIDYDTNNQTSFTSLMNIPNPFSMVSNTITNNGGNCQPSHIFQGFENFPRDLSELVCVNQQQIMDRTIDGFYDMSNGGSTITTTSTESTSWGDMNSLVYSPLVSDYEGCCQQGSIPQDAIAFEESRYFAMQMQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0538 309 Gene3D - 70 145 - -
Mtr5g0538 309 CDD SANT 71 113 IPR001005 -
Mtr5g0538 309 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mtr5g0538 309 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr5g0538 309 SMART sant 67 115 IPR001005 -
Mtr5g0538 309 SMART sant 13 64 IPR001005 -
Mtr5g0538 309 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mtr5g0538 309 CDD SANT 16 62 IPR001005 -
Mtr5g0538 309 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr5g0538 309 Coils Coil 120 143 - -
Mtr5g0538 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr5g0538 309 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr5g0538 309 PANTHER OS09G0431300 PROTEIN 206 290 - -
Mtr5g0538 309 PANTHER OS09G0431300 PROTEIN 1 192 - -
Mtr5g0538 309 Gene3D - 7 68 - -
Mtr5g0538 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mtr5g0538 309 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 192 - -
Mtr5g0538 309 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 206 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0538 Mtr-Chr5 5118262 5120060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0538 1 137 MYB Transcription Factor Family AT5G65790 89.781 3.20e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g0538 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0538 K09422 - gmx:100812816 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0538 5 5118262 5120060 Mtr4g3465 4 48172847 48174298 PCT