Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0536 ATGGGTCTTAATGATCAAGATTCTCTTCACCTTGTTCTAGGTTTATCTTTGAATACTTCTACTACTCCAAAGGAAATAACTACCACCACCCCCATGAATCCCTATTCCACCTCCAACGAGCCATCCTTAACGTTAGGACTCTCTGGTGAGAGTTATAACCTTATAAGTCACAAACAAGCTACCAAAGGTTATGGTGAGGAACTTTGTAGACAAACTTCATCACCTCATAGTGTTGTTAATTCATCTTTCTCAAGTGGGAGAGTACTGCAAGTGAAGAGGGAGAGAGATGAAGAAGAAGAAGAAGTAGAAGAAGAGAGGGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACAAATGCTAGAAAGAAATTGAGGCTTACCAAAGAACAATCACTATTGCTTGAAGAAAGCTTCAAACTACACAGCACTCTCAATCCTAAACAAAAACAAGCTTTAGCGAGACAGTTGAATCTAAGGCCACGACAAGTTGAAGTATGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAACAAACAGAGGTGGATTGCGAGTTCTTGAAAAAATGTTGTGAAACATTAACAGACGAAAACAGGAGGCTCAAAAAGGAGTTACAAGAGCTGAAGTCATTGAAAGTAGCACAACCTTTGTACATGCCTATGCCTGCAGCCACCCTCTCCATCTGCCCGTCTTGCGAAAGACTCGGCCGCGTCGCCGACGGTGGTGGTGGTTCCAATAAGATCACTGCCTTCACTATGGCTCCAAATACTCATTTCTACAATCCTTTCAACAATCCTTCTGCAGCATGTTAA 813 0.4207 MGLNDQDSLHLVLGLSLNTSTTPKEITTTTPMNPYSTSNEPSLTLGLSGESYNLISHKQATKGYGEELCRQTSSPHSVVNSSFSSGRVLQVKRERDEEEEEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKVAQPLYMPMPAATLSICPSCERLGRVADGGGGSNKITAFTMAPNTHFYNPFNNPSAAC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0536 270 Gene3D - 128 174 - -
Mtr5g0536 270 CDD homeodomain 122 179 IPR001356 GO:0003677
Mtr5g0536 270 Coils Coil 88 108 - -
Mtr5g0536 270 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Mtr5g0536 270 MobiDBLite consensus disorder prediction 73 120 - -
Mtr5g0536 270 MobiDBLite consensus disorder prediction 73 88 - -
Mtr5g0536 270 MobiDBLite consensus disorder prediction 105 120 - -
Mtr5g0536 270 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Mtr5g0536 270 SUPERFAMILY Homeodomain-like 115 179 IPR009057 -
Mtr5g0536 270 Pfam Homeobox associated leucine zipper 178 211 IPR003106 GO:0006355|GO:0043565
Mtr5g0536 270 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Mtr5g0536 270 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 270 - -
Mtr5g0536 270 Coils Coil 184 214 - -
Mtr5g0536 270 SMART HOX_1 120 182 IPR001356 GO:0003677
Mtr5g0536 270 PANTHER - 1 270 - -
Mtr5g0536 270 MobiDBLite consensus disorder prediction 22 41 - -
Mtr5g0536 270 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0536 Mtr-Chr5 5069638 5071845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0536 1 270 Homeobox Transcription Factor Family AT4G37790 60.554 1.07e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr5g0536 Homeodomain 6.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0536 K09338 - gmx:100795135 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0536 5 5069638 5071845 Mtr4g3468 4 48218663 48220327 PCT