Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0527 ATGATGCAAATTATGTCCCCTATCTATGTGCCTGAACTTGGAATGGAGGATCTCAATTTCTTTAACCAATACACGATGGATTCTCTTGCATCTCCAACATTATTCGACAACTTTGGCTTTCACTTTGATGACAACGAAACGACACCAAATTGTTTCCCAGTTGAAACTCATCCTGATGATCAAACAAGGCCAACCAAGAAGATCAAGACATCGATAACCCCTTCTTCCCAGTCATCACCTCAACTCATTTCTTTTGAGCACTCCAGTTCAACACCAATTGCTTCAAAGCAATTTTATAACCTTGATTATTCAGATGTAAAACCTAAAGTCGGGAAAAGGTGTAATGAAAACAAGGATTTTCTACCAGCTTTGGTTTCTCAAGGTTCTTATGAAGATCAAAAAATATTTTCCAATTATGATAACCAAGCGAATCAGACCAGAAACACTGCTCAAGCTCGAGAACATGTAATGGCCGAAAGAAAACGAAGGGAAAAGCTTACCCGAAGTTTCATCGCTCTTTCAGCCATTGTTCCTGGCCTCAAGAAGATGGACAAAGCTTCTGTGTTGGGAGATGCTACCAAGTACATGAAACAACTACAGGCACGTTTGCAGACACTGGAGGAACAAGCTGAAGACAACAAAAAAGCTGGATCCACAGTCCAAGTGAAGAGATCTATTATCTTCACTAATAATAATGATGATGATAGCAACTCCAATAACCAACCACTTCCTGAAATCGAAGTAAGAGTTTCAAGCAAAGATGTACTCATCAAGATTCAATGTGACAAACACAGTGGACGTGCCGCTACGGTGCTTGGCCAATTAGAAAACCTTAATCTCACTGTCCATAGTAGTACCTTTTTGCCCTTTGGAAACAACATTGTTGATGTAACCATTGTTGCTCAGATGAACAAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATACGACAGGCTTTAATCATCCAAAATTAA 981 0.3996 MMQIMSPIYVPELGMEDLNFFNQYTMDSLASPTLFDNFGFHFDDNETTPNCFPVETHPDDQTRPTKKIKTSITPSSQSSPQLISFEHSSSTPIASKQFYNLDYSDVKPKVGKRCNENKDFLPALVSQGSYEDQKIFSNYDNQANQTRNTAQAREHVMAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDATKYMKQLQARLQTLEEQAEDNKKAGSTVQVKRSIIFTNNNDDDSNSNNQPLPEIEVRVSSKDVLIKIQCDKHSGRAATVLGQLENLNLTVHSSTFLPFGNNIVDVTIVAQMNKENCVTAKDLLGSIRQALIIQN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0527 326 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Mtr5g0527 326 Coils Coil 189 216 - -
Mtr5g0527 326 MobiDBLite consensus disorder prediction 53 83 - -
Mtr5g0527 326 MobiDBLite consensus disorder prediction 67 83 - -
Mtr5g0527 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 212 IPR036638 GO:0046983
Mtr5g0527 326 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 325 - -
Mtr5g0527 326 SMART finulus 156 205 IPR011598 GO:0046983
Mtr5g0527 326 Gene3D - 140 216 IPR036638 GO:0046983
Mtr5g0527 326 PANTHER BHLH TRANSCRIPTION FACTOR 2 325 - -
Mtr5g0527 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0527 Mtr-Chr5 4951848 4954988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0527 2 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.873 7.97e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g0527 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0527 - - cam:101507557 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0527 5 4951848 4954988 Mtr5g0527 5 4951848 4954988 ECH