Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0526 ATGACATCAAATCATGAGTCATGGACAAGTTGGTTGTGTGATTTGGAACCAGAAGATTACAATATCATCAATGAGATTAACATAGCCACTTTGCCACAAGAGAATAACAACTTGCAACAATCTTTTTCTGGTGGTAGCCATTGCTCTCACACAACCTCAAACACTATGAGCAATTCTTCAGGAGATGTTAACAAGACTAACCCTTCAAACATAGGGTACCCTTCCTTACCAAAAAAGGATTCTTCCCATTCTTACATTCTTTGTTTTGGAAATGAGAATCCAGAATCAATGTTGAACATTGGTTCAACTTTAAAACCAAAAGGCAAGGTTTCTAATCATGGGAAATCTTTAGCCTCAAAAGGGTCCTTAGAAAACCAAAAAAAGGGACCAAAACGCAATATTCAAGAGAGCAAGAAGACTGATTCAGCTGCTAGAAATGCTCAAGATCACATAATTGCTGAGAGGAAGAGAAGAGAAAAAATTAGTCAAAAGTTTATAGCTCTTTCAGCACTCCTTCCAGACTTGAAAAAGATGGATAAGGCTTCTGTATTAGGGGATGCTATAAACCATGTGAAACAGCTTCAAGAAAAAGTGAAGCTATTGGAAGAAAAGAACCAAAAGAATAACGTAGAATCTGTGTCTATGGTATATGTTGAGAAGACAAAGTCATATTCTTCAGATGAAGATGTTTCAGAAACCTCATCAAATTCTGGCTATGGTAATTGTTGTCACACTCACACCTCAAAACCAAGTAGGTCACTGCCTGAAGTTGAGGCAAGAGTGTCAGAGAAAAACGTGCTGATTCGTGTCCATTGTGAGAAACATAAGGGTGCATTGATGAACATAATCCAAGAGATAGAGAATCTTCATCTATCAGTCACTAGTAGTAGTGCATTGCTATTTGGAACCACAAAACTTGACATAACCATCATAGCTGAGATGGATGAGAAGTTCAGCCTAAGCGTGCAGGAGCTAGCTAGAAAACTTCGGGTTGTACTTTTGTAA 1005 0.3801 MTSNHESWTSWLCDLEPEDYNIINEINIATLPQENNNLQQSFSGGSHCSHTTSNTMSNSSGDVNKTNPSNIGYPSLPKKDSSHSYILCFGNENPESMLNIGSTLKPKGKVSNHGKSLASKGSLENQKKGPKRNIQESKKTDSAARNAQDHIIAERKRREKISQKFIALSALLPDLKKMDKASVLGDAINHVKQLQEKVKLLEEKNQKNNVESVSMVYVEKTKSYSSDEDVSETSSNSGYGNCCHTHTSKPSRSLPEVEARVSEKNVLIRVHCEKHKGALMNIIQEIENLHLSVTSSSALLFGTTKLDITIIAEMDEKFSLSVQELARKLRVVLL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0526 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Mtr5g0526 334 MobiDBLite consensus disorder prediction 227 254 - -
Mtr5g0526 334 Gene3D - 135 210 IPR036638 GO:0046983
Mtr5g0526 334 PANTHER BHLH TRANSCRIPTION FACTOR 2 334 - -
Mtr5g0526 334 SMART finulus 151 200 IPR011598 GO:0046983
Mtr5g0526 334 MobiDBLite consensus disorder prediction 228 250 - -
Mtr5g0526 334 MobiDBLite consensus disorder prediction 99 150 - -
Mtr5g0526 334 MobiDBLite consensus disorder prediction 125 150 - -
Mtr5g0526 334 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Mtr5g0526 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 211 IPR036638 GO:0046983
Mtr5g0526 334 Coils Coil 184 211 - -
Mtr5g0526 334 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 334 - -
Mtr5g0526 334 MobiDBLite consensus disorder prediction 44 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0526 Mtr-Chr5 4937824 4939781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0526 9 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.368 2.35e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g0526 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0526 - - gmx:100816024 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0526 5 4937824 4939781 Mtr5g0526 5 4937824 4939781 ECH
Mtr5g0526 5 4937824 4939781 Mtr4g3478 4 48350714 48352929 PCT