Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0525 ATGGAAAAATTAAACACATCTTCAAATGCATCATCAACTAGCTGGCTATCTCATTTTCTATTTGAAGAAAATGAAATAGAGGGTTGTGATTTGTTTCAACAATGCGAACAAAACTTGTTTGGTGAAGAAGAGCTTATTTCACATGACATAGCAAGTATTTTTCAACAAGAGGAAAATTTGCAACAACAACCATTGTTACTTTTTGAAAGCTACTCTTCTTGTACTTTGGAAACAAATTTGGAAAGAGACAACAAGAAGTTGAAAACGAACAACACTTTGCATGAAGTTGTTCCAGTGTCACAAACACAACTACCTCAAAATCAAAACATTGTTGAAACTAAAAATACACAAGGACAAGGGACTAAGAGGTCTGTTGCTCATGATCATCAAGACCGTATCATGGCGGAGAGAAAGAGAAGAGAGAAACTCAGTCAGTGCTTAATTACTCTAGCTGCTCTTATTCCTGGCTTGAAGAAGATGGACAAGGCTTCAGTCATAGGGGATGCTATCAAGCATGTAAAAGAGCTCCAAGAACGTTTGAGAGTATTAGAAGAACAAAACAAGAATAGTCCTATTGAGTTTGTAGTGACGCTTAACAAACCGAAGCTAAATTATGAGTCATGGAGTGATGATGGTTCTAAGGCTGCTAGTGCTAATAATGAAACTCTCCCTCATGTGGAAGCCAAAATTTTGGGCAAAGACGTTCTCATAAGGATCCAGTGCCAAAAACAAAAGAGTTTTTTGCTTAATATATTGGTTGAGATTCAACAGCTTCATCTCTTTGTTGTTAACAATAATGTCCTAGCTGTTGGGGATTCTATCCATGACATAACAATCATTGCTCAGATGGGAACAGGATACAACTTGACCAAAAATGATCTTGTAAAAAGCGTACAGGCGGCTGTATTGAGATCGATGTCGTAA 924 0.3712 MEKLNTSSNASSTSWLSHFLFEENEIEGCDLFQQCEQNLFGEEELISHDIASIFQQEENLQQQPLLLFESYSSCTLETNLERDNKKLKTNNTLHEVVPVSQTQLPQNQNIVETKNTQGQGTKRSVAHDHQDRIMAERKRREKLSQCLITLAALIPGLKKMDKASVIGDAIKHVKELQERLRVLEEQNKNSPIEFVVTLNKPKLNYESWSDDGSKAASANNETLPHVEAKILGKDVLIRIQCQKQKSFLLNILVEIQQLHLFVVNNNVLAVGDSIHDITIIAQMGTGYNLTKNDLVKSVQAAVLRSMS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0525 307 PANTHER BHLH TRANSCRIPTION FACTOR 77 305 - -
Mtr5g0525 307 SMART finulus 133 182 IPR011598 GO:0046983
Mtr5g0525 307 PANTHER BHLH TRANSCRIPTION FACTOR 77 305 - -
Mtr5g0525 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Mtr5g0525 307 Coils Coil 166 193 - -
Mtr5g0525 307 Pfam Helix-loop-helix DNA-binding domain 133 177 IPR011598 GO:0046983
Mtr5g0525 307 Gene3D - 135 223 IPR036638 GO:0046983
Mtr5g0525 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 191 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0525 Mtr-Chr5 4921596 4924306 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0525 119 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.641 4.70e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g0525 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0525 - - mtr:MTR_5g014560 574.704