Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0522 ATGGAAAAATTAAACTCATCTTCAAACTCATCATCAACTAGCTGGTTATCTGATCTGCTATTGGAAGAAATGGAAATAGAGGGTTGTGATTTGTTTCAACAATGTGAACAAAACTTGTTTGGTGAAAAAGAGTTTCTTTCAAATGACATAGCAAGTATTTTTCAACAAGAGGAAAATTTCCAACATCAACCTTTGTTATCTTCTGAAAGCTATTCTTCTTCTTATCCTTTAGAAAAGAATTTCGAAAGACCCAACAAAAAATTGAAAAAAAACACTTCTTCCCCTTCTTCTACCACTTCTCAGATTCTGTCTTTTGACTGTACCTTAAATACAAAAAAGAACAAGGTTGTTCCATTGTCACAAACAGAATTACCTCAAAATAGAAAAGGGTCATTGCAAAAACAAAACATTGTTGAAACTATAAAGCCACAAGGACAAGGAACTAAGAGGTCTGTGGCTCATAATCAGGACCATATCATAGCAGAGAGAAAGAGAAGAGAGAAACTCAGTCAGTGCTTGATTGCTCTAGCTGCTCTTATTCCTGGCTTGAAGAAGATGGACAAGGCTTCAGTCCTAGGAGATGCAATCAAGTACGTGAAAGAGCTCCAAGAACGTTTGAGGGTATTAGAGGAACAAAACAAAAATAGTCATGTTCAGTCTGTGGTGACGGTTGATGAACAACAACTAAGTTACGACTCATCAAACAGTGATGACTCTGAAGTTGCTAGTGGTAATAATGAAACTCTCCCACATGTAGAAGCCAAAGTTTTGGACAAGGATGTGCTCATAAGGATCCATTGCCAAAAGCAAAAGGGACTTTTGCTCAAAATATTGGTCGAGATTCAAAAGCTTCATCTCTTTGTTGTTAATAACAGTGTCCTACCTTTTGGAGATTCTATCCTTGATATAACCATCGTTGCTCAGATGGGAATAGGGTACAACTTGACCAGAAACGATCTAGTGAAAAAACTACGTGTGGCTGCATTGAGAGCCATGTCATAA 1002 0.3723 MEKLNSSSNSSSTSWLSDLLLEEMEIEGCDLFQQCEQNLFGEKEFLSNDIASIFQQEENFQHQPLLSSESYSSSYPLEKNFERPNKKLKKNTSSPSSTTSQILSFDCTLNTKKNKVVPLSQTELPQNRKGSLQKQNIVETIKPQGQGTKRSVAHNQDHIIAERKRREKLSQCLIALAALIPGLKKMDKASVLGDAIKYVKELQERLRVLEEQNKNSHVQSVVTVDEQQLSYDSSNSDDSEVASGNNETLPHVEAKVLDKDVLIRIHCQKQKGLLLKILVEIQKLHLFVVNNSVLPFGDSILDITIVAQMGIGYNLTRNDLVKKLRVAALRAMS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0522 333 Pfam Helix-loop-helix DNA-binding domain 157 203 IPR011598 GO:0046983
Mtr5g0522 333 PANTHER BHLH TRANSCRIPTION FACTOR 9 333 - -
Mtr5g0522 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 219 IPR036638 GO:0046983
Mtr5g0522 333 Gene3D - 146 219 IPR036638 GO:0046983
Mtr5g0522 333 SMART finulus 159 208 IPR011598 GO:0046983
Mtr5g0522 333 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 9 333 - -
Mtr5g0522 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Mtr5g0522 333 MobiDBLite consensus disorder prediction 70 100 - -
Mtr5g0522 333 Coils Coil 192 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0522 Mtr-Chr5 4896701 4901112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0522 12 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.650 4.08e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g0522 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0522 - - mtr:MTR_5g014560 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0522 5 4896701 4901112 Mtr5g0522 5 4896701 4901112 ECH
Mtr5g0522 5 4896701 4901112 Mtr4g3479 4 48356444 48358673 PCT