LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g0521	ATGGATCCGCATGAAACAACAAACTCTCCTCATCCTCACCACGATCAACTTGAAAATGTCATCTTGGTGGAGCCAAATCCATTCACAAATACCACCCAAACCACCATCATGGAACCAAATACTGCTCAACTCTCTCCAATCATCATGAACGCTAACCTTTCCCCTAATTACGAGCCTATTGTCAACAATATTGTTCCTTCCTCCTTGAATCCAAGCATAAGTGTTTCCTCTGACACTGAATCAATCAAGAGAAAGAGGGGTCGGCCTAGGAAGCATTTTCCTATTGGCAATATTGCTTCGAGTTTGGGATCTGACCCAGGCCCAACACTGGCTTCAATTGCTACTTCTCCTTCTTCTTCCACTTGCAAGAAGAGTACTAGTGGAAAGGGAAGGGGAAGGCCTCGTGGCTCTTTTAAGAAGAAGCATTTGGTTGAAACACATGGAGTTACTGAATCATGTTTCTCTCCACATGTGATCTTTGTGAATCAAGGAGAGGACATAATTGCAAAAGTTACAGCCTTTAGCCAGGCAGTAGCAGGACCTAATATTGAGATATGCATTTTGTCTGCTCATGGTTTAGTTGGCACTGTCGCCCTTCATCATTTAGGGAGCATTATTAATTACAAGCATTGGATGTGTGACATTGTCATATCTGTTGGATTTCGACCACCAAAATATGCCCCACTAAAATGGTTTACAGATGGAACATGGAAATCCAAATCCAATGACAACATGGAATGGAGTAGTTGGATATATTATGTTCTCGTTATTTCTACTATGCAATTTAGAAGTATATCTGACAACAACTATGGCAATAAAAGAATGAGTTACTTCAAGGTGTCTCTAGTAAACCCTGATTCACGCCTTTTGGTAGGTGTAGTTGCTGATAAGTTTATTGCGGCATCATTAGTAAAGGTCATAGTGGGTAGTTTTACATTGGATGGCAAAAAGAATGGCCTGAATAACCTGAAATATGAACCTTCTTCAGCATCATTGTCCCAACTTGTTGCTTTTGGAACTCCAACCAATGCGACCACTCACGGGCCTTCATCTGAGTCCTTAGGTGTCAATGAGAATAATCTTTTTTGCCAACGGCCTGAAATCTACAATAAGATTATCCAACCCATTCCTACCATGTCGATGTACCAGCAACCATAA	1158	0.4119	MDPHETTNSPHPHHDQLENVILVEPNPFTNTTQTTIMEPNTAQLSPIIMNANLSPNYEPIVNNIVPSSLNPSISVSSDTESIKRKRGRPRKHFPIGNIASSLGSDPGPTLASIATSPSSSTCKKSTSGKGRGRPRGSFKKKHLVETHGVTESCFSPHVIFVNQGEDIIAKVTAFSQAVAGPNIEICILSAHGLVGTVALHHLGSIINYKHWMCDIVISVGFRPPKYAPLKWFTDGTWKSKSNDNMEWSSWIYYVLVISTMQFRSISDNNYGNKRMSYFKVSLVNPDSRLLVGVVADKFIAASLVKVIVGSFTLDGKKNGLNNLKYEPSSASLSQLVAFGTPTNATTHGPSSESLGVNENNLFCQRPEIYNKIIQPIPTMSMYQQP*	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g0521	385	Pfam	Plants and Prokaryotes Conserved (PCC) domain	156	312	IPR005175	-
	Mtr5g0521	385	SMART	AT_hook_2	83	95	IPR017956	GO:0003677
	Mtr5g0521	385	SMART	AT_hook_2	128	140	IPR017956	GO:0003677
	Mtr5g0521	385	MobiDBLite	consensus disorder prediction	102	127	-	-
	Mtr5g0521	385	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	35	209	IPR039605	GO:0003680
	Mtr5g0521	385	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	264	383	IPR039605	GO:0003680
	Mtr5g0521	385	MobiDBLite	consensus disorder prediction	71	138	-	-
	Mtr5g0521	385	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8	35	209	-	-
	Mtr5g0521	385	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8	264	383	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g0521	Mtr-Chr5	4867618	4873107	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g0521	76	311	AT-hook Motif Nuclear Localized (AHL) Family	AT3G61310	35.270	3.11e-22	95.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g0521	-		-	mtr:MTR_5g014360	256.144