Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0518 ATGGCTACAGATATTGGCCTTCTTTCCAATATGACTCAGATCCAAAAATCATCACAATCACAATCTCAACAACACCAACCAAACCCTAATTCCAACACCACTACACCCCCCTCACCATCTTCATCAACTTGGATGTGGAACCCTAAACAACACCAAGAACAAGAAGATGAAGATTCATGGGAGGTAAGGGCTTTTGCTGAAGACACAAGGAATATTATGAACACAACATGGCCACCAAGGTCCTACACCTGTACCTTTTGCAGAAGAGAGTTCCGGTCAGCTCAAGCTCTTGGTGGTCACATGAATGTTCACCGCCGCGACCGTGCTCGTCTCCATCAAACCCAACCACCGTTAAATTCTTCTCATCCTTCATCACCATTCATAAATATTCCTCCACAAGACCTTGTTGCTAATGCTGGATTGTGCCTTCTTTACCATTTACCAAACCCTAATAATAATGCTTTTGCTTCCTTCAATAGTTCTAGTCCTAATGGAGAATCTCCTTCTACTTTTCTCTCAATCTCATCATCAACATCTTATCCTCCAAATAATTTGATGATGCAAATGCAAGCTTGTTCTCCATCTTTTAATTTTCAAGTGGATAATTCAGCTAGGTTGATCAACAATAGCATTTCTTCTTTTTCTAGCAAAGTGGACCAGCAACATGCTACTTGCACCTCCATTGATGATAATGGTCATGAAATTGAAGAGCTTGATCTTGAGCTCCGTTTAGGGAACAAGCCAACACCAACTTGA 756 0.4127 MATDIGLLSNMTQIQKSSQSQSQQHQPNPNSNTTTPPSPSSSTWMWNPKQHQEQEDEDSWEVRAFAEDTRNIMNTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQTQPPLNSSHPSSPFINIPPQDLVANAGLCLLYHLPNPNNNAFASFNSSSPNGESPSTFLSISSSTSYPPNNLMMQMQACSPSFNFQVDNSARLINNSISSFSSKVDQQHATCTSIDDNGHEIEELDLELRLGNKPTPT* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0518 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Mtr5g0518 251 SMART c2h2final6 82 104 IPR013087 -
Mtr5g0518 251 Pfam C2H2-type zinc finger 82 106 - -
Mtr5g0518 251 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 45 246 - -
Mtr5g0518 251 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Mtr5g0518 251 MobiDBLite consensus disorder prediction 1 59 - -
Mtr5g0518 251 Gene3D Classic Zinc Finger 72 125 - -
Mtr5g0518 251 PANTHER OS07G0101800 PROTEIN 45 246 - -
Mtr5g0518 251 MobiDBLite consensus disorder prediction 1 49 - -
Mtr5g0518 251 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0518 Mtr-Chr5 4836125 4837218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0518 41 248 C2H2 Transcription Factor Family AT4G17810 42.857 8.31e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g0518 zf-C2H2_6 5.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0518 - - gmx:100818142 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0518 5 4836125 4837218 Mtr5g0518 5 4836125 4837218 ECH