Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0516 ATGGATTCGTGTGAACCACCACACTCTCCTCACCCTTACCAACTTCAACCGAAAAATATTGTACCAGTAGGCCCTAACCCATTCACAAACACTTCCCCAATCACCATGATAACACCAACAACCGCTCAATTCCCTTTGTCCAACATCAATACTAATCCTTTACCTCAATATGAGCATTTATCCTTGATGCTATTTGTGGGGGCTTCTTCCTCTGGATCTGGTTCGTTTAAGAGAAAGAGGGGAAGACCTAGGAAGTATTTTCCTAATGGCAAAATTACTTTGGGATCAAGCTTGGACCCAACACATGCTGCATCATTTGCTTCTCCTTCTTCATCTGCTGTGAAGAAGAATACCAGCGGAAGGGGAAGGGGAAGGCCCAGGAAGTATTTTCCTAATGGAAAAATAACTTTGGGGTCAAGCTTGGACCCAACACATGCTGCAACTTTTGCTTCTCCTTCTTCATCTGCTGTGAAGAAGAATACCAGCATAAGGGGAAAGGGAAAGCCTCGTGGATCTTTTAAGAAGAAACTACCTATTGAAATGTCAGGAGTTACTAATGGCTCTGGTTTCTCTCCACATGTGATCATTGTGAACCGTGGAGAGGACATTGTAGCTAAAGTTGGGGCCTTTTGTCAGGGAGGACCTAATACAGATATGTGCATTCTTTCTGCTCATGGTTTGGTTGGCAATGCTGCCCTTTATCAGTCAGGGTCCGTTGTTACTTACGAGGGTCGGTTTGAAATCATCTCATTGTCAGGAAATTTAGAAGTATCTGACAACACCACTAAATTTAAGAAAATGGGTTACTTCAAGGTGTCTCTCGAGGGTCATGGTTCACGCCTTTTGGCAGGCGTAGTTGCTGATAAGCTTATTGCAGCATCATTAGTAAAGGTTACTATTGGTGTTTTTACTTTGGATTGCAAAAAGGCTAGCTCCAATTATCTGAAACTTGGATCTTCTTCGGTGCCACCATCCCAAATTGCTGCTTTTGGGACTCTAACTAGTGATGCATATCAAGGGCCATCATCTGACTCCTCTGGTGACAATGATAATATTCCTTTTAATCAACTTCCTGGAATCAACAACAATGCTACTCATCCAATTCCAACTATGTCGATGTACCAGGAACTGTGGGATCGCCAAACTCAACAGTGA 1155 0.4303 MDSCEPPHSPHPYQLQPKNIVPVGPNPFTNTSPITMITPTTAQFPLSNINTNPLPQYEHLSLMLFVGASSSGSGSFKRKRGRPRKYFPNGKITLGSSLDPTHAASFASPSSSAVKKNTSGRGRGRPRKYFPNGKITLGSSLDPTHAATFASPSSSAVKKNTSIRGKGKPRGSFKKKLPIEMSGVTNGSGFSPHVIIVNRGEDIVAKVGAFCQGGPNTDMCILSAHGLVGNAALYQSGSVVTYEGRFEIISLSGNLEVSDNTTKFKKMGYFKVSLEGHGSRLLAGVVADKLIAASLVKVTIGVFTLDCKKASSNYLKLGSSSVPPSQIAAFGTLTSDAYQGPSSDSSGDNDNIPFNQLPGINNNATHPIPTMSMYQELWDRQTQQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0516 384 MobiDBLite consensus disorder prediction 72 135 - -
Mtr5g0516 384 Gene3D - 192 317 - -
Mtr5g0516 384 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g0516 384 CDD DUF296 192 303 IPR005175 -
Mtr5g0516 384 MobiDBLite consensus disorder prediction 148 174 - -
Mtr5g0516 384 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 116 384 IPR039605 GO:0003680
Mtr5g0516 384 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 121 IPR039605 GO:0003680
Mtr5g0516 384 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 116 384 - -
Mtr5g0516 384 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 31 121 - -
Mtr5g0516 384 SUPERFAMILY AF0104/ALDC/Ptd012-like 188 304 - -
Mtr5g0516 384 MobiDBLite consensus disorder prediction 338 361 - -
Mtr5g0516 384 ProSiteProfiles PPC domain profile profile. 187 325 IPR005175 -
Mtr5g0516 384 SMART AT_hook_2 120 132 IPR017956 GO:0003677
Mtr5g0516 384 SMART AT_hook_2 77 89 IPR017956 GO:0003677
Mtr5g0516 384 MobiDBLite consensus disorder prediction 94 118 - -
Mtr5g0516 384 Pfam Plants and Prokaryotes Conserved (PCC) domain 192 303 IPR005175 -
Mtr5g0516 384 PRINTS AT-hook-like domain signature 77 87 IPR017956 GO:0003677
Mtr5g0516 384 PRINTS AT-hook-like domain signature 118 129 IPR017956 GO:0003677
Mtr5g0516 384 PRINTS AT-hook-like domain signature 165 175 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0516 Mtr-Chr5 4816748 4820119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0516 83 369 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 36.424 1.76e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0516 - - mtr:MTR_5g014360 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0516 5 4816748 4820119 Mtr4g3484 4 48465819 48473150 PCT